PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT2G33720.1
Common NameT1B8.29
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 326aa    MW: 37420.7 Da    PI: 6.5148
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT2G33720.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3322.1e-10206313499
                  E-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHH.HHHHHT--TT-EEEEEE-SSS CS
           B3   4 vltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltledesg.rsWevkliyrkksgryvltkGWke.FvkangLkegDfvvFkldgrs 88 
                  ++t+s+ +++ rlvl  +f++ h           + k+ ++  + ++d +   + ++ l+ + ks+++vl +GW++ Fv+  gL++gD++  + d+ s
  AT2G33720.1 206 AMTKSSIGNLYRLVLKASFVDIHilrylplddqmMVKEDSGLAVEVYDHDTdSVHNLALKKWAKSSSFVLVSGWRKcFVDRRGLQVGDVIGMYWDR-S 302
                  5889999999**********888**999888876444456667777774445888999999*************8769***************655.8 PP

                  EE..EEEEE-S CS
           B3  89 efelvvkvfrk 99 
                  e +l++ v+++
  AT2G33720.1 303 ESKLHFCVLSR 313
                  88899999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.59E-14201312IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0021203314IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-12203315IPR015300DNA-binding pseudobarrel domain
CDDcd100175.32E-18207312No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MKMPPPFSAS KTQYLFHDES SENSKKSLVS TTLSLSSCEN PNKRKMNSDE VLNISCIPRD  60
YKLTQVERKI ARMRNLSYQE KAEDEWYGVS TELTLFKDPW IIKKVFHFAS VLDMAPNSVS  120
NTHCLLDTES PENAEESLVS LDLCFYDKTW PHDPNVAYNK PTSEEAINLA WMRTMSKRAR  180
KEEEKYYVST ELTLLTVADP WTLKMAMTKS SIGNLYRLVL KASFVDIHIL RYLPLDDQMM  240
VKEDSGLAVE VYDHDTDSVH NLALKKWAKS SSFVLVSGWR KCFVDRRGLQ VGDVIGMYWD  300
RSESKLHFCV LSRSETMDSA PLPPSP
Expression -- Microarray ? help Back to Top
Source ID E-value
Genevisible267450_at0.0
Expression AtlasAT2G33720-
AtGenExpressAT2G33720-
ATTED-IIAT2G33720-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT2G33720.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT2G33720
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY9247570.0AY924757.1 Arabidopsis thaliana hypothetical protein (At2g33720) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_180928.10.0AP2/B3-like transcriptional factor family protein
SwissprotO236590.0Y2372_ARATH; B3 domain-containing protein At2g33720
TrEMBLD7LGD21e-177D7LGD2_ARALL; Uncharacterized protein
STRINGAT2G33720.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM456952
Representative plantOGRP782034
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Xiao YL,Malik M,Whitelaw CA,Town CD
    Cloning and sequencing of cDNAs for hypothetical genes from chromosome 2 of Arabidopsis.
    Plant Physiol., 2002. 130(4): p. 2118-28
    [PMID:12481096]
  3. Dal Bosco C, et al.
    Inactivation of the chloroplast ATP synthase gamma subunit results in high non-photochemical fluorescence quenching and altered nuclear gene expression in Arabidopsis thaliana.
    J. Biol. Chem., 2004. 279(2): p. 1060-9
    [PMID:14576160]
  4. Czechowski T,Bari RP,Stitt M,Scheible WR,Udvardi MK
    Real-time RT-PCR profiling of over 1400 Arabidopsis transcription factors: unprecedented sensitivity reveals novel root- and shoot-specific genes.
    Plant J., 2004. 38(2): p. 366-79
    [PMID:15078338]
  5. Scheible WR, et al.
    Genome-wide reprogramming of primary and secondary metabolism, protein synthesis, cellular growth processes, and the regulatory infrastructure of Arabidopsis in response to nitrogen.
    Plant Physiol., 2004. 136(1): p. 2483-99
    [PMID:15375205]
  6. Swaminathan K,Peterson K,Jack T
    The plant B3 superfamily.
    Trends Plant Sci., 2008. 13(12): p. 647-55
    [PMID:18986826]