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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
AT2G32370.1 |
Common Name | HDG3, HDGL2-3, T32F6.11, UCL1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family |
HD-ZIP |
Protein Properties |
Length: 725aa MW: 80070.3 Da PI: 6.5098 |
Description |
homeodomain GLABROUS 3 |
Gene Model |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 58.8 | 9.3e-19 | 69 | 124 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
++k ++t+ q+ e+e++F+++++p+ ++r +L+++lgL+ q+k+WFqN+R++ k
AT2G32370.1 69 KKKYNRHTQLQISEMEAFFRECPHPDDKQRYDLSAQLGLDPVQIKFWFQNKRTQNK 124
789999***********************************************998 PP
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2 | START | 158.4 | 5.7e-50 | 253 | 472 | 2 | 206 |
HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEEC CS
START 2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevis 86
la a++el+ +a+++ep+W+ +n de+ ++f ++ + +++ea+r++++v m+++ ve l++ + W++++a +a t+e+i+
AT2G32370.1 253 LAFGAMEELLVMAQVAEPLWMGGFngtsLALNLDEYEKTFRTGLGprlggFRTEASRETALVAMCPTGIVEMLMQEN-LWSTMFAgivgRARTHEQIM 349
78899****************8777776679999999999777669999****************************.******************** PP
TT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX CS
START 87 sg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlp 177
+ g lq m+ae+q+lsplv R+++fvRy++q+g+g w++vd+S+d+ ++ + +++++pSg+li+++ g+skvtwvehv+++++
AT2G32370.1 350 ADaagnfnGNLQIMSAEYQVLSPLVTtRESYFVRYCKQQGEGLWAVVDISIDHLLPNIN----LKCRRRPSGCLIQEMHSGYSKVTWVEHVEVDDAGS 443
*********************************************************97....99999****************************** PP
HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
START 178 hwllrslvksglaegaktwvatlqrqcek 206
++++ l+ +g+a++a++wv tl rqce+
AT2G32370.1 444 YSIFEKLICTGQAFAANRWVGTLVRQCER 472
***************************97 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0048825 | Biological Process | cotyledon development |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0008289 | Molecular Function | lipid binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 725 aa
Download sequence Send
to blast |
MSQSNMVPVA NNGDNNNDNE NNNNNNNNGG TDNTNAGNDS GDQDFDSGNT SSGNHGEGLG 60 NNQAPRHKKK KYNRHTQLQI SEMEAFFREC PHPDDKQRYD LSAQLGLDPV QIKFWFQNKR 120 TQNKNQQERF ENSELRNLNN HLRSENQRLR EAIHQALCPK CGGQTAIGEM TFEEHHLRIL 180 NARLTEEIKQ LSVTAEKISR LTGIPVRSHP RVSPPNPPPN FEFGMGSKGN VGNHSRETTG 240 PADANTKPII MELAFGAMEE LLVMAQVAEP LWMGGFNGTS LALNLDEYEK TFRTGLGPRL 300 GGFRTEASRE TALVAMCPTG IVEMLMQENL WSTMFAGIVG RARTHEQIMA DAAGNFNGNL 360 QIMSAEYQVL SPLVTTRESY FVRYCKQQGE GLWAVVDISI DHLLPNINLK CRRRPSGCLI 420 QEMHSGYSKV TWVEHVEVDD AGSYSIFEKL ICTGQAFAAN RWVGTLVRQC ERISSILSTD 480 FQSVDSGDHI TLTNHGKMSM LKIAERIART FFAGMTNATG STIFSGVEGE DIRVMTMKSV 540 NDPGKPPGVI ICAATSFWLP APPNTVFDFL REATHRHNWD VLCNGEMMHK IAEITNGIDK 600 RNCASLLRHG HTSKSKMMIV QETSTDPTAS FVLYAPVDMT SMDITLHGGG DPDFVVILPS 660 GFAIFPDGTG KPGGKEGGSL LTISFQMLVE SGPEARLSVS SVATTENLIR TTVRRIKDLF 720 PCQTA
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in siliques. {ECO:0000269|PubMed:16778018, ECO:0000269|Ref.1}. |
Functional Description ? help
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Source |
Description |
TAIR | Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family. Together with ATML1 and PDF2, it is involved in cotyledon development. |
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | EF988635 | 0.0 | EF988635.1 Arabidopsis thaliana homeodomain-leucine zipper protein (HDG3) mRNA, complete cds. |
Publications
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- Tavares R,Aubourg S,Lecharny A,Kreis M
Organization and structural evolution of four multigene families in Arabidopsis thaliana: AtLCAD, AtLGT, AtMYST and AtHD-GL2. Plant Mol. Biol., 2000. 42(5): p. 703-17 [PMID:10809443] - Riechmann JL, et al.
Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Science, 2000. 290(5499): p. 2105-10 [PMID:11118137] - Schrick K,Nguyen D,Karlowski WM,Mayer KF
START lipid/sterol-binding domains are amplified in plants and are predominantly associated with homeodomain transcription factors. Genome Biol., 2004. 5(6): p. R41 [PMID:15186492] - Nakamura M, et al.
Characterization of the class IV homeodomain-Leucine Zipper gene family in Arabidopsis. Plant Physiol., 2006. 141(4): p. 1363-75 [PMID:16778018] - Day RC,Herridge RP,Ambrose BA,Macknight RC
Transcriptome analysis of proliferating Arabidopsis endosperm reveals biological implications for the control of syncytial division, cytokinin signaling, and gene expression regulation. Plant Physiol., 2008. 148(4): p. 1964-84 [PMID:18923020] - Kawanabe T,Fujimoto R,Sasaki T,Taylor JM,Dennis ES
A comparison of transcriptome and epigenetic status between closely related species in the genus Arabidopsis. Gene, 2012. 506(2): p. 301-9 [PMID:22796129] - Burkart-Waco D,Ngo K,Lieberman M,Comai L
Perturbation of parentally biased gene expression during interspecific hybridization. PLoS ONE, 2015. 10(2): p. e0117293 [PMID:25719202]
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