PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | AT2G31215.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 129aa MW: 15223.4 Da PI: 10.4729 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27.6 | 5.2e-09 | 25 | 69 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 Er RR+ N++f+ L+ l+P++ +K a+i++ + YI++Lq AT2G31215.1 25 FLTERERRALFNDRFFDLKNLIPNP-----TKGGEASIVQDGIVYINELQ 69 678*********************9.....8888999***********99 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 3.4E-11 | 17 | 81 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.43E-7 | 17 | 73 | No hit | No description |
SuperFamily | SSF47459 | 2.22E-13 | 18 | 90 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 12.17 | 19 | 68 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.4E-6 | 25 | 69 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.6E-5 | 25 | 74 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 129 aa Download sequence Send to blast |
MERYTKKNER FKAEEGKGSK KSRTFLTERE RRALFNDRFF DLKNLIPNPT KGGEASIVQD 60 GIVYINELQR LVSELKYLVE KKKCGARHNN IEVDNKNTIY GTSKIEHPFS KNKNTFNCLI 120 RTLRFVHHF |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | E-value | ||||
GEO | 30684869 | 0.0 | ||||
Expression Atlas | AT2G31215 | - | ||||
AtGenExpress | AT2G31215 | - |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | AT2G31215.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
T-DNA Express | AT2G31215 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC006593 | 1e-131 | AC006593.5 Arabidopsis thaliana chromosome 2 clone F16D14 map nga361, complete sequence. | |||
GenBank | CP002685 | 1e-131 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_850161.1 | 9e-91 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | ||||
Swissprot | F4IQQ9 | 8e-92 | BH138_ARATH; Transcription factor bHLH138 | ||||
TrEMBL | A0A178VQD4 | 7e-58 | A0A178VQD4_ARATH; Uncharacterized protein | ||||
STRING | AT2G31215.1 | 3e-90 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM30362 | 2 | 2 | Representative plant | OGRP2659 | 14 | 31 |
Link Out ? help Back to Top | |
---|---|
Phytozome | AT2G31215.1 |
Entrez Gene | 817678 |
iHOP | AT2G31215 |
wikigenes | AT2G31215 |
Publications ? help Back to Top | |||
---|---|---|---|
|