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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
AT2G27070.1 |
| Common Name | ARR13, RR13, T20P8.12 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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| Family |
ARR-B |
| Protein Properties |
Length: 575aa MW: 65323.2 Da PI: 9.2857 |
| Description |
response regulator 13 |
| Gene Model |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | G2-like | 62.8 | 6.7e-20 | 225 | 278 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
k+++ Wt+ L + F++a++++ G +k +Pk+il +m+v+ Lt+e+v+SHLQkYRl
AT2G27070.1 225 KKKIWWTNPLQDLFLQAIQHI-GYDKVVPKKILAIMNVPYLTRENVASHLQKYRL 278
67899****************.********************************7 PP
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| 2 | Response_reg | 76.1 | 1.3e-25 | 18 | 128 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEE..EESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
Response_reg 1 vlivdDeplvrellrqalekegyeeva..eaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93
v++vdD++++++++ ++lek++y+e++ ++d +++al +lk+++ +Dli++D mpgm+Gl+l k+i++e +l ++v++ ++++ +e l+ G
AT2G27070.1 18 VMVVDDNRVFLDIWSRMLEKSKYREITviAVDYPKKALSTLKNQRdnIDLIITDYYMPGMNGLQLKKQITQEFGNLSVLVMS--SDPNKEEESLSCG 112
89*********************98887799**********999999************************999******99..5666889****** PP
ESEEEESS--HHHHHH CS
Response_reg 94 akdflsKpfdpeelvk 109
a++f+ Kp++p +l k
AT2G27070.1 113 AMGFIPKPIAPTDLPK 128
************9987 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0000160 | Biological Process | phosphorelay signal transduction system |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009736 | Biological Process | cytokinin-activated signaling pathway |
| GO:0005634 | Cellular Component | nucleus |
| GO:0000156 | Molecular Function | phosphorelay response regulator activity |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 575 aa
Download sequence Send
to blast |
MAFAQSVYNQ SSVLKINVMV VDDNRVFLDI WSRMLEKSKY REITVIAVDY PKKALSTLKN 60
QRDNIDLIIT DYYMPGMNGL QLKKQITQEF GNLSVLVMSS DPNKEEESLS CGAMGFIPKP 120
IAPTDLPKIY QFALTYKRNG KSTLSTEQNQ KDANVSVPQQ IMLVPEQAYV LKTKKKNCSS 180
KSDTRTVNST NVSHVSTNGS RKNRKRKPKG GPSDDGESLS QPPKKKKIWW TNPLQDLFLQ 240
AIQHIGYDKV VPKKILAIMN VPYLTRENVA SHLQKYRLFV KRVVHQGRFS MLSDRGKDSM 300
FRQTHIKEPY VNYYTPSTSW YETSLNNRSF YSESVHGHSR LLSEAREPVR YNQMSYNYMN 360
RNISFENQPS QNEETRTVFE PPVMANKISQ TSQVLGFGQL GPSAISGHNF NTNMMSSYGS 420
LTPNQPGTSH FSYGMQSVLN NENATYNPQP PANATTQPNL DELPQLENLN LYNDLGNTSE 480
LPYNISNFQS DDNKKQGEED GDWTFVNINQ DQSNGESSNT IATPETNTPN FNINPNQNQG 540
QAVPEFTDWS FLDQQPRRLG IRIGYFGFKF SGLEV
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| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 204 | 226 | KRKPKGGPSDDGESLSQPPKKKK |
| Functional Description ? help
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| Source |
Description |
| TAIR | member of Response Regulator: B- Type |
| UniProt | Putative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC005623 | 0.0 | AC005623.3 Arabidopsis thaliana chromosome 2 clone T20P8 map B68, complete sequence. |
| GenBank | CP002685 | 0.0 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
| Publications
? help Back to Top |
- Riechmann JL, et al.
Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
Science, 2000. 290(5499): p. 2105-10
[PMID:11118137] - Hwang I,Sheen J
Two-component circuitry in Arabidopsis cytokinin signal transduction.
Nature, 2001. 413(6854): p. 383-9
[PMID:11574878] - Hwang I,Chen HC,Sheen J
Two-component signal transduction pathways in Arabidopsis.
Plant Physiol., 2002. 129(2): p. 500-15
[PMID:12068096] - Imamura A,Kiba T,Tajima Y,Yamashino T,Mizuno T
In vivo and in vitro characterization of the ARR11 response regulator implicated in the His-to-Asp phosphorelay signal transduction in Arabidopsis thaliana.
Plant Cell Physiol., 2003. 44(2): p. 122-31
[PMID:12610214] - Heyl A,Schm
Cytokinin signal perception and transduction.
Curr. Opin. Plant Biol., 2003. 6(5): p. 480-8
[PMID:12972049] - Hoth S, et al.
Monitoring genome-wide changes in gene expression in response to endogenous cytokinin reveals targets in Arabidopsis thaliana.
FEBS Lett., 2003. 554(3): p. 373-80
[PMID:14623097] - Pischke MS,Huttlin EL,Hegeman AD,Sussman MR
A transcriptome-based characterization of habituation in plant tissue culture.
Plant Physiol., 2006. 140(4): p. 1255-78
[PMID:16489130] - Manzano C,Abraham Z,L
Identification of ubiquitinated proteins in Arabidopsis.
Plant Mol. Biol., 2008. 68(1-2): p. 145-58
[PMID:18535787]
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