PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT2G23760.2 | ||||||||
Common Name | BLH4, F27L4.6, SAW2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | TALE | ||||||||
Protein Properties | Length: 627aa MW: 69271.1 Da PI: 6.8755 | ||||||||
Description | BEL1-like homeodomain 4 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 29.8 | 1e-09 | 444 | 481 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe n+yps +++ LA+++gL+ +qV++WF N R + AT2G23760.2 444 FEHflNPYPSDADKHLLARQTGLSRNQVSNWFINARVR 481 665569******************************88 PP | |||||||
2 | BELL | 123.7 | 7.4e-40 | 302 | 373 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +r e+q++k+kLls+leeVd+rY++y+eq+q+v++sF++v+g+g+a pYt+lA+ka+SrhFrcLkda+a q+ AT2G23760.2 302 DRIEHQRRKVKLLSMLEEVDRRYNHYCEQMQMVVNSFDQVMGYGAAVPYTTLAQKAMSRHFRCLKDAVAVQL 373 589******************************************************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 2.4E-88 | 232 | 371 | IPR006563 | POX domain |
Pfam | PF07526 | 4.6E-52 | 238 | 370 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.86 | 422 | 485 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.26E-12 | 425 | 486 | No hit | No description |
SMART | SM00389 | 1.1E-9 | 425 | 489 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.21E-17 | 426 | 492 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.7E-28 | 428 | 491 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 2.8E-18 | 442 | 481 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000013 | anatomy | cauline leaf | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0000230 | anatomy | inflorescence meristem | ||||
PO:0000293 | anatomy | guard cell | ||||
PO:0008019 | anatomy | leaf lamina base | ||||
PO:0009005 | anatomy | root | ||||
PO:0009006 | anatomy | shoot system | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009010 | anatomy | seed | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009029 | anatomy | stamen | ||||
PO:0009030 | anatomy | carpel | ||||
PO:0009031 | anatomy | sepal | ||||
PO:0009032 | anatomy | petal | ||||
PO:0009046 | anatomy | flower | ||||
PO:0009047 | anatomy | stem | ||||
PO:0009052 | anatomy | flower pedicel | ||||
PO:0009067 | anatomy | filament | ||||
PO:0009074 | anatomy | style | ||||
PO:0020030 | anatomy | cotyledon | ||||
PO:0020038 | anatomy | petiole | ||||
PO:0020100 | anatomy | hypocotyl | ||||
PO:0020102 | anatomy | portion of transmitting tissue | ||||
PO:0020137 | anatomy | leaf apex | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0001054 | developmental stage | vascular leaf senescent stage | ||||
PO:0001078 | developmental stage | plant embryo cotyledonary stage | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0004507 | developmental stage | plant embryo bilateral stage | ||||
PO:0007064 | developmental stage | LP.12 twelve leaves visible stage | ||||
PO:0007095 | developmental stage | LP.08 eight leaves visible stage | ||||
PO:0007098 | developmental stage | LP.02 two leaves visible stage | ||||
PO:0007103 | developmental stage | LP.10 ten leaves visible stage | ||||
PO:0007115 | developmental stage | LP.04 four leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage | ||||
PO:0007616 | developmental stage | flowering stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 627 aa Download sequence Send to blast |
MGLATTTSSM SQDYHHHQGI FSFSNGFHRS SSTTHQEEVD ESAVVSGAQI PVYETAGMLS 60 EMFAYPGGGG GGSGGEILDQ STKQLLEQQN RHNNNNNSTL HMLLPNHHQG FAFTDENTMQ 120 PQQQQHFTWP SSSSDHHQNR DMIGTVHVEG GKGLSLSLSS SLAAAKAEEY RSIYCAAVDG 180 TSSSSNASAH HHQFNQFKNL LLENSSSQHH HHQVVGHFGS SSSSPMAASS SIGGIYTLRN 240 SKYTKPAQEL LEEFCSVGRG HFKKNKLSRN NSNPNTTGGG GGGGSSSSAG TANDSPPLSP 300 ADRIEHQRRK VKLLSMLEEV DRRYNHYCEQ MQMVVNSFDQ VMGYGAAVPY TTLAQKAMSR 360 HFRCLKDAVA VQLKRSCELL GDKEAAGAAS SGLTKGETPR LRLLEQSLRQ QRAFHHMGMM 420 EQEAWRPQRG LPERSVNILR AWLFEHFLNP YPSDADKHLL ARQTGLSRNQ VSNWFINARV 480 RLWKPMVEEM YQQEAKEREE AEEENENQQQ QRRQQQTNNN DTKPNNNENN FTVITAQTPT 540 TMTSTHHEND SSFLSSVAAA SHGGSDAFTV ATCQQDVSDF HVDGDGVNVI RFGTKQTGDV 600 SLTLGLRHSG NIPDKNTSFS VRDFGDF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrs_A | 7e-16 | 431 | 488 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 7e-16 | 431 | 488 | 1 | 58 | Homeobox protein Meis1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.12624 | 0.0 | seed |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
Genevisible | 267298_at | 0.0 | ||||
Expression Atlas | AT2G23760 | - | ||||
AtGenExpress | AT2G23760 | - | ||||
ATTED-II | AT2G23760 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in lateral organs. {ECO:0000269|PubMed:17873098}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
TAIR | Encodes a member of the BEL family of homeodomain proteins. Plants doubly mutant for saw1/saw2 (blh2/blh4) have serrated leaves. BP is expressed in the serrated leaves, therefore saw2 and saw1 may act redundantly to repress BP in leaves. | |||||
UniProt | Transcription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression. {ECO:0000269|PubMed:17873098}. |
Function -- GeneRIF ? help Back to Top | ||||||
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT2G23760.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Regulation -- ATRM (Manually Curated Target Genes) ? help Back to Top | ||||||
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Source | Target Gene (A: Activate/R: Repress) | |||||
ATRM | AT4G08150(R) |
Interaction ? help Back to Top | ||||||
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Source | Intact With | |||||
BioGRID | AT2G27220, AT2G35940, AT4G08150, AT4G32040, AT4G32980, AT4G36870, AT5G25220, AT5G41410, AT1G19700, AT1G23380, AT1G26260, AT1G62360, AT1G70510, AT1G75410 | |||||
IntAct | Search Q94KL5 |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT2G23760 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY058179 | 0.0 | AY058179.1 Arabidopsis thaliana At2g23760/F27L4.6 mRNA, complete cds. | |||
GenBank | AY142019 | 0.0 | AY142019.1 Arabidopsis thaliana At2g23760/F27L4.6 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001031404.1 | 0.0 | BEL1-like homeodomain 4 | ||||
Refseq | NP_179956.1 | 0.0 | BEL1-like homeodomain 4 | ||||
Refseq | NP_850044.1 | 0.0 | BEL1-like homeodomain 4 | ||||
Swissprot | Q94KL5 | 0.0 | BLH4_ARATH; BEL1-like homeodomain protein 4 | ||||
TrEMBL | A0A1P8AZ70 | 0.0 | A0A1P8AZ70_ARATH; BEL1-like homeodomain 4 | ||||
STRING | AT2G23760.2 | 0.0 | (Arabidopsis thaliana) |
Link Out ? help Back to Top | |
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Phytozome | AT2G23760.2 |
Entrez Gene | 816908 |
iHOP | AT2G23760 |
wikigenes | AT2G23760 |