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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
AT2G22200.1 |
| Common Name | ERF056, T26C19.14 |
| Organism |
|
| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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| Family |
ERF |
| Protein Properties |
Length: 261aa MW: 29792.5 Da PI: 7.0622 |
| Description |
ERF family protein |
| Gene Model |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 62.2 | 1.2e-19 | 71 | 119 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
y+GVr+++ +g+WvAeIr p++ r+r +lg+f tae+Aa a+++a+ +l+g
AT2G22200.1 71 YRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFETAEKAALAYDQAAFQLRG 119
9******9.**********965...5************************997 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009873 | Biological Process | ethylene-activated signaling pathway |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 261 aa
Download sequence Send
to blast |
METASLSFPV PNTSFGVNKS MPLGLNQLTP YQIHQIQNQL NHRRSTISNL SPNRIRMKNL 60
TPSTSKTKNL YRGVRQRHWG KWVAEIRLPK NRTRLWLGTF ETAEKAALAY DQAAFQLRGD 120
IAKLNFPNLI HEDMNPLPSS VDTKLQAICK SLRKTEEICS VSDQTKEYSV YSVSDKTELF 180
LPKAELFLPK REHLETNELS NESPRSDETS LLDESQAEYS SSDKTFLDFS DTEFEEIGSF 240
GLRKFPSVEI DWDAISKLAN S
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| Functional Description ? help
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| Source |
Description |
| TAIR | encodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 8 members in this subfamily including RAP2.4. |
| UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC007168 | 0.0 | AC007168.5 Arabidopsis thaliana chromosome 2 clone T26C19 map mi238, complete sequence. |
| GenBank | CP002685 | 0.0 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
| Publications
? help Back to Top |
- Riechmann JL, et al.
Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
Science, 2000. 290(5499): p. 2105-10
[PMID:11118137] - Brown RL,Kazan K,McGrath KC,Maclean DJ,Manners JM
A role for the GCC-box in jasmonate-mediated activation of the PDF1.2 gene of Arabidopsis.
Plant Physiol., 2003. 132(2): p. 1020-32
[PMID:12805630] - Yamada K, et al.
Empirical analysis of transcriptional activity in the Arabidopsis genome.
Science, 2003. 302(5646): p. 842-6
[PMID:14593172] - Nakano T,Suzuki K,Fujimura T,Shinshi H
Genome-wide analysis of the ERF gene family in Arabidopsis and rice.
Plant Physiol., 2006. 140(2): p. 411-32
[PMID:16407444] - Efroni I, et al.
Regulation of leaf maturation by chromatin-mediated modulation of cytokinin responses.
Dev. Cell, 2013. 24(4): p. 438-45
[PMID:23449474] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Okamuro JK,Caster B,Villarroel R,Van Montagu M,Jofuku KD
The AP2 domain of APETALA2 defines a large new family of DNA binding proteins in Arabidopsis.
Proc. Natl. Acad. Sci. U.S.A., 1997. 94(13): p. 7076-81
[PMID:9192694]
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