 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
AT2G21240.2 |
| Common Name | ATBPC4, BBR, BPC4, F7O24.4 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 296aa MW: 33306.8 Da PI: 9.4974 |
| Description |
basic pentacysteine 4 |
| Gene Model |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 354.6 | 2.2e-108 | 1 | 296 | 1 | 301 |
GAGA_bind 1 mdddgsre..rnkg.yye................paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdn 79
m++ g+++ r+k+ y++ ++++l +++++ms++aerda+++ern+a+s+kk+ava+rd+a++qrdkal+er+kal+erdn
AT2G21240.2 1 MENGGQYDnaRFKPdYFKgaqsmwnmipqhqikeQHNALV--MNKKIMSILAERDAAVHERNQAVSAKKEAVAARDEALQQRDKALSERDKALIERDN 96
9999999999****9999*********9888765446666..99****************************************************** PP
GAGA_bind 80 kllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkak..kkkkkseksk 175
+++al+++ensl++a lsg k++d +d+++++ e +kle++p+++ ++e++++k ++kr +ke+k+ k+kk +e+ +
AT2G21240.2 97 AYAALQHHENSLNFA-------LSGGKCVD----------GDDCFGIGEPHKLEVFPLSTIPPEVTNTKVVNKR-----KKENKQGlsKVKKVGEDLN 172
**********96655.......59*****9..........799**************************99943.....333444333788889999* PP
GAGA_bind 176 kkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLa 273
++v +++ ++s+++++s+d++ln v++De+t+PvP+CsCtG++rqCYkWGnGGWqS+CCttt+S+yPLP+++++r++R++grKmS+++f++lL++L+
AT2G21240.2 173 RRVPAPG--KKSRTDWDSQDVGLNLVTFDETTMPVPMCSCTGSTRQCYKWGNGGWQSSCCTTTLSQYPLPQMPNKRHSRMGGRKMSGNVFSRLLSRLS 268
*******..57*************************************************************************************** PP
GAGA_bind 274 aeGydlsnpvDLkdhWAkHGtnkfvtir 301
aeGydls+pvDLkd+WA+HGtn+++ti+
AT2G21240.2 269 AEGYDLSCPVDLKDYWARHGTNRYITIK 296
***************************8 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0050793 | Biological Process | regulation of developmental process |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0042803 | Molecular Function | protein homodimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 296 aa
Download sequence Send
to blast |
MENGGQYDNA RFKPDYFKGA QSMWNMIPQH QIKEQHNALV MNKKIMSILA ERDAAVHERN 60
QAVSAKKEAV AARDEALQQR DKALSERDKA LIERDNAYAA LQHHENSLNF ALSGGKCVDG 120
DDCFGIGEPH KLEVFPLSTI PPEVTNTKVV NKRKKENKQG LSKVKKVGED LNRRVPAPGK 180
KSRTDWDSQD VGLNLVTFDE TTMPVPMCSC TGSTRQCYKW GNGGWQSSCC TTTLSQYPLP 240
QMPNKRHSRM GGRKMSGNVF SRLLSRLSAE GYDLSCPVDL KDYWARHGTN RYITIK
|
| Expression --
Description ? help
Back to Top |
| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in sepal and petal vasculature, in anthers, in young rosette, in the lateral and primary roots, and in the whole ovule. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}. |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AK229090 | 0.0 | AK229090.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL16-37-J01. |
| GenBank | AK317165 | 0.0 | AK317165.1 Arabidopsis thaliana AT2G21240 mRNA, complete cds, clone: RAFL21-54-A06. |
| GenBank | AY084554 | 0.0 | AY084554.1 Arabidopsis thaliana clone 111536 mRNA, complete sequence. |
| GenBank | BT026109 | 0.0 | BT026109.1 Arabidopsis thaliana At2g21240 mRNA, complete cds. |
| Publications
? help Back to Top |
- Meister RJ, et al.
Definition and interactions of a positive regulatory element of the Arabidopsis INNER NO OUTER promoter.
Plant J., 2004. 37(3): p. 426-38
[PMID:14731261] - Fabro G, et al.
Genome-wide expression profiling Arabidopsis at the stage of Golovinomyces cichoracearum haustorium formation.
Plant Physiol., 2008. 146(3): p. 1421-39
[PMID:18218973] - Wanke D, et al.
Alanine zipper-like coiled-coil domains are necessary for homotypic dimerization of plant GAGA-factors in the nucleus and nucleolus.
PLoS ONE, 2011. 6(2): p. e16070
[PMID:21347358] - Monfared MM, et al.
Overlapping and antagonistic activities of BASIC PENTACYSTEINE genes affect a range of developmental processes in Arabidopsis.
Plant J., 2011. 66(6): p. 1020-31
[PMID:21435046] - Klopffleisch K, et al.
Arabidopsis G-protein interactome reveals connections to cell wall carbohydrates and morphogenesis.
Mol. Syst. Biol., 2011. 7: p. 532
[PMID:21952135]
|
