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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
AT2G20880.1 |
| Common Name | AtERF53, ERF053, ERF53, F5H14.15 |
| Organism |
|
| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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| Family |
ERF |
| Protein Properties |
Length: 336aa MW: 38397.7 Da PI: 6.4126 |
| Description |
ERF family protein |
| Gene Model |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 61.6 | 1.7e-19 | 186 | 236 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
y+GVr+++ +g+WvAeIr p++ r+r +lg+f+taeeAa a+++ + kl+ge
AT2G20880.1 186 LYRGVRQRH-WGKWVAEIRKPRN---RTRLWLGTFDTAEEAAMAYDREAFKLRGE 236
59******9.**********954...5**************************97 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009651 | Biological Process | response to salt stress |
| GO:0009873 | Biological Process | ethylene-activated signaling pathway |
| GO:2000070 | Biological Process | regulation of response to water deprivation |
| GO:0005634 | Cellular Component | nucleus |
| GO:0005737 | Cellular Component | cytoplasm |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 336 aa
Download sequence Send
to blast |
MATAKNKGKS IRVLGTSEAE KKDEMELEEE FQFSSGKYKD SGPGSDMWLG DASSTSPRSL 60
RKTRTFDRHN PYLVSSYATP QPPTTTTCSV SFPFYLPPAI QNQQRFLHPN DPSGQRQQQM 120
ISFDPQQQVQ PYVAQQQQQQ QHLLQYWRDI LKLSPSGRMM MMNMLRQESD LPLTRPPVQP 180
FSATKLYRGV RQRHWGKWVA EIRKPRNRTR LWLGTFDTAE EAAMAYDREA FKLRGETARL 240
NFPELFLNKQ EPTPVHQKQC ETGTTSEDSS RRGEDDSSTA LAVGGVSEET GWAEAWFNAI 300
PEEWGPGSPL WDDYHFPISN HKDDLDATQN SSSDTI
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional activator involved in abiotic stress tolerance. Can directly regulate stress-related gene expression by binding to the DNA sequence 5'-[AG]CCGAC-3' (DRE element) of their promoter region. Involved in the regulation of stomatal closure movement under drought stress (PubMed:23625358). Acts as a positive regulator of drought stress response (PubMed:22095047). {ECO:0000269|PubMed:22095047, ECO:0000269|PubMed:23625358}. |
| Function -- GeneRIF ? help
Back to Top |
- RGLG2 negatively regulates the drought stress response by mediating AtERF53 transcriptional activity in Arabidopsis.[AtERF53]
[PMID: 22095047] - Data indicate that expression of AtERF53 in wild-type Arabidopsis was responsive to heat and abscisic acid (ABA) treatment.
[PMID: 23625358]
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| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Induced by drought stress (PubMed:18550687, PubMed:22095047, PubMed:23625358). Induced by salt stress (PubMed:22095047). Induced by abscisic acid (ABA) and heat stress (PubMed:23625358). {ECO:0000269|PubMed:18550687, ECO:0000269|PubMed:22095047, ECO:0000269|PubMed:23625358}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC006234 | 0.0 | AC006234.4 Arabidopsis thaliana chromosome 2 clone F5H14 map mi148, complete sequence. |
| GenBank | AY062843 | 0.0 | AY062843.1 Arabidopsis thaliana AP2 domain transcription factor (At2g20880; F5H14.15) mRNA, complete cds. |
| GenBank | AY081659 | 0.0 | AY081659.1 Arabidopsis thaliana AP2 domain transcription factor (At2g20880) mRNA, complete cds. |
| GenBank | CP002685 | 0.0 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
| Publications
? help Back to Top |
- Riechmann JL, et al.
Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
Science, 2000. 290(5499): p. 2105-10
[PMID:11118137] - Yamada K, et al.
Empirical analysis of transcriptional activity in the Arabidopsis genome.
Science, 2003. 302(5646): p. 842-6
[PMID:14593172] - Koroleva OA,Tomlinson ML,Leader D,Shaw P,Doonan JH
High-throughput protein localization in Arabidopsis using Agrobacterium-mediated transient expression of GFP-ORF fusions.
Plant J., 2005. 41(1): p. 162-74
[PMID:15610358] - Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
Mol. Biol. Evol., 2006. 23(2): p. 469-78
[PMID:16280546] - Nakano T,Suzuki K,Fujimura T,Shinshi H
Genome-wide analysis of the ERF gene family in Arabidopsis and rice.
Plant Physiol., 2006. 140(2): p. 411-32
[PMID:16407444] - Ditt RF, et al.
The Arabidopsis thaliana transcriptome in response to Agrobacterium tumefaciens.
Mol. Plant Microbe Interact., 2006. 19(6): p. 665-81
[PMID:16776300] - Osuna D, et al.
Temporal responses of transcripts, enzyme activities and metabolites after adding sucrose to carbon-deprived Arabidopsis seedlings.
Plant J., 2007. 49(3): p. 463-91
[PMID:17217462] - Ehlting J, et al.
Comparative transcriptome analysis of Arabidopsis thaliana infested by diamond back moth (Plutella xylostella) larvae reveals signatures of stress response, secondary metabolism, and signalling.
BMC Genomics, 2008. 9: p. 154
[PMID:18400103] - Endo A, et al.
Drought induction of Arabidopsis 9-cis-epoxycarotenoid dioxygenase occurs in vascular parenchyma cells.
Plant Physiol., 2008. 147(4): p. 1984-93
[PMID:18550687] - Cheng MC,Hsieh EJ,Chen JH,Chen HY,Lin TP
Arabidopsis RGLG2, functioning as a RING E3 ligase, interacts with AtERF53 and negatively regulates the plant drought stress response.
Plant Physiol., 2012. 158(1): p. 363-75
[PMID:22095047] - Efroni I, et al.
Regulation of leaf maturation by chromatin-mediated modulation of cytokinin responses.
Dev. Cell, 2013. 24(4): p. 438-45
[PMID:23449474] - Hsieh EJ,Cheng MC,Lin TP
Functional characterization of an abiotic stress-inducible transcription factor AtERF53 in Arabidopsis thaliana.
Plant Mol. Biol., 2013. 82(3): p. 223-37
[PMID:23625358] - Cheng MC,Hsieh EJ,Chen JH,Chen HY,Lin TP
CORRECTION. Arabidopsis RGLG2, Functioning as a RING E3 Ligase, Interacts with AtERF53 and Negatively Regulates the Plant Drought Stress Response.
Plant Physiol., 2016. 170(2): p. 1162-3
[PMID:26826724] - Huang KC,Lin WC,Cheng WH
Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
BMC Plant Biol., 2018. 18(1): p. 40
[PMID:29490615]
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