PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

LBD

Protein Properties

Length: 124aa MW: 14486.1 Da PI: 10.4266

Description

LOB domain-containing protein 9

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AT2G19820.1	genome	TAIR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	112.3	3.3e-35	12	113	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 +Ca C +++++C+k+C +apyfpae++ +++n+hklFG+sn++k+++ +++++ r++++ss+++e++a+ +dP +G +g+i+kl++q+e k l++l AT2G19820.1 12 PCALCTTKNKRCPKKCDFAPYFPAERKGEYENAHKLFGTSNIIKMMRFASKDKqRDMLASSILMEGDAWKKDPARGGFGMIQKLKWQIELRKIYLNEL 109 7********************************************99766659**************************************999 PP DUF260 98 keel 101 ke++ AT2G19820.1 110 KEKI 113 9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.149	11	113	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.8E-29	12	109	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008150	Biological Process	biological_process

Sequence ? help Back to Top
Protein Sequence Length: 124 aa Download sequence Send to blast
MDVSRVNVKR APCALCTTKN KRCPKKCDFA PYFPAERKGE YENAHKLFGT SNIIKMMRFA 60 SKDKQRDMLA SSILMEGDAW KKDPARGGFG MIQKLKWQIE LRKIYLNELK EKIKVEKEKT 120 ELRL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	5e-17	11	100	10	98	LOB family transfactor Ramosa2.1
5ly0_B	5e-17	11	100	10	98	LOB family transfactor Ramosa2.1
Search in ModeBase

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	240254477	0.0
Expression Atlas	AT2G19820	-
AtGenExpress	AT2G19820	-

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AT2G19820.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Phenotype -- Mutation ? help Back to Top
Source	ID
T-DNA Express	AT2G19820

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB473868	0.0	AB473868.1 Arabidopsis thaliana ASL35 mRNA for ASYMMETRIC LEAVES2-like 35 protein, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_179572.1	5e-88	LOB domain-containing protein 9
Swissprot	O82198	4e-89	LBD9_ARATH; LOB domain-containing protein 9
TrEMBL	D7L0W5	5e-62	D7L0W5_ARALL; Predicted protein
STRING	AT2G19820.1	2e-87	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12282	14	32

Link Out ? help Back to Top
Phytozome	AT2G19820.1
Entrez Gene	816501
iHOP	AT2G19820
wikigenes	AT2G19820

Publications ? help Back to Top
Iwakawa H, et al. The ASYMMETRIC LEAVES2 gene of Arabidopsis thaliana, required for formation of a symmetric flat leaf lamina, encodes a member of a novel family of proteins characterized by cysteine repeats and a leucine zipper. Plant Cell Physiol., 2002. 43(5): p. 467-78 [PMID:12040093] Shuai B,Reynaga-Peña CG,Springer PS The lateral organ boundaries gene defines a novel, plant-specific gene family. Plant Physiol., 2002. 129(2): p. 747-61 [PMID:12068116] Yang L,Liu Z,Lu F,Dong A,Huang H SERRATE is a novel nuclear regulator in primary microRNA processing in Arabidopsis. Plant J., 2006. 47(6): p. 841-50 [PMID:16889646] Matsumura Y,Iwakawa H,Machida Y,Machida C Characterization of genes in the ASYMMETRIC LEAVES2/LATERAL ORGAN BOUNDARIES (AS2/LOB) family in Arabidopsis thaliana, and functional and molecular comparisons between AS2 and other family members. Plant J., 2009. 58(3): p. 525-37 [PMID:19154202]