PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT2G18328.1 | ||||||||
Common Name | ATRL4, RL4, T30D6 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | MYB_related | ||||||||
Protein Properties | Length: 77aa MW: 8983 Da PI: 9.6021 | ||||||||
Description | RAD-like 4 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 37.6 | 5.2e-12 | 9 | 56 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 +WT+ Ed+++ a +++ ++ +W +Iar +g g++ +++k ++ + AT2G18328.1 9 SSWTAREDKQFEMALAKFDKDtpdRWQKIARAVG-GKSTEEVKRHYELL 56 58********************************.***********765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.2E-7 | 5 | 58 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 11.907 | 6 | 61 | IPR017884 | SANT domain |
SMART | SM00717 | 1.4E-11 | 7 | 59 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.6E-10 | 9 | 55 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.17E-14 | 9 | 65 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.42E-6 | 15 | 57 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000014 | anatomy | rosette leaf | ||||
PO:0000293 | anatomy | guard cell |
Sequence ? help Back to Top |
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Protein Sequence Length: 77 aa Download sequence Send to blast |
MASSSMSTSS WTAREDKQFE MALAKFDKDT PDRWQKIARA VGGKSTEEVK RHYELLLRDV 60 NDIESGRYPQ PRYRNTN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 3e-27 | 1 | 76 | 1 | 76 | RADIALIS |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.49279 | 1e-130 | flower| leaf |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | AT2G18328 | |||||
AtGenExpress | AT2G18328 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed just outside the vascular bundles in the rosette stem and the leaf traces. Not detected in floral primordia. {ECO:0000269|PubMed:17672842}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT2G18328.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT2G18328 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC006439 | 1e-128 | AC006439.4 Arabidopsis thaliana chromosome 2 clone T30D6 map mi39, complete sequence. | |||
GenBank | CP002685 | 1e-128 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. | |||
GenBank | DQ487660 | 1e-128 | DQ487660.1 Arabidopsis thaliana clone 0000013653_0000009781 unknown protein gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001077912.1 | 4e-52 | RAD-like 4 | ||||
Swissprot | Q1G3C4 | 4e-53 | RADL4_ARATH; Protein RADIALIS-like 4 | ||||
TrEMBL | A0A178VVV7 | 1e-50 | A0A178VVV7_ARATH; RL4 | ||||
STRING | AT2G18328.1 | 2e-51 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM221 | 28 | 198 |
Link Out ? help Back to Top | |
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Phytozome | AT2G18328.1 |
Entrez Gene | 5007884 |
iHOP | AT2G18328 |
wikigenes | AT2G18328 |
Publications ? help Back to Top | |||
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