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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT2G03060.1 | ||||||||
Common Name | AGL30 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 332aa MW: 37592.2 Da PI: 6.9885 | ||||||||
Description | AGAMOUS-like 30 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 65.7 | 4.6e-21 | 10 | 53 | 2 | 45 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 + en+ rq tf+kR+ngilKKA+ELS+LCd+++ +++fs+tgk AT2G03060.1 10 KLENTNGRQSTFAKRKNGILKKANELSILCDIDIVLLMFSPTGK 53 6799**************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 4.06E-22 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.4E-31 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 24.334 | 1 | 53 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00120 | 1.52E-24 | 2 | 53 | No hit | No description |
PRINTS | PR00404 | 7.1E-18 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 9.7E-19 | 11 | 53 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.1E-18 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.1E-18 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010152 | Biological Process | pollen maturation | ||||
GO:0080092 | Biological Process | regulation of pollen tube growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000293 | anatomy | guard cell | ||||
PO:0009032 | anatomy | petal | ||||
PO:0009046 | anatomy | flower | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0025195 | anatomy | pollen tube cell | ||||
PO:0025281 | anatomy | pollen | ||||
PO:0001017 | developmental stage | M germinated pollen stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage | ||||
PO:0007616 | developmental stage | flowering stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 332 aa Download sequence Send to blast |
MGRVKLKIKK LENTNGRQST FAKRKNGILK KANELSILCD IDIVLLMFSP TGKAAICCGT 60 RRCFSFESSE LEENFPKVGS RCKYTRIYSL KDLSTQARIL QARISEIHGR LSYWTEPDKI 120 NNVEHLGQLE ISIRQSLDQL RAHKMQDGIQ IPLEQQLQSM SWILNSNTTN IVTEEHNSIP 180 QREVECSASS SFGSYPGYFG TGKSPEMTIP GQETSFLDEL NTGQLKQDTS SQQQFTNNNN 240 ITAYNPNLHN DMNHHQTLPP PPLPLTLPHA QVYIPMNQRE YHMNGFFEAP PPDSSAYNDN 300 TNQTRFGSSS SSLPCSISMF DEYLFSQMQQ PN |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.41433 | 0.0 | flower |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 334184116 | 0.0 | ||||
Genevisible | 266793_at | 0.0 | ||||
Expression Atlas | AT2G03060 | - | ||||
AtGenExpress | AT2G03060 | - | ||||
ATTED-II | AT2G03060 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269|PubMed:12949148}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
TAIR | Encodes a member of the MIKC (MADS box, Keratin binding domain, and C terminal domain containing )family of transcriptional regulators. AGL30 is expressed in pollen.It forms heterodimers with other MICK family members. | |||||
UniProt | Probable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT2G03060.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT2G03060 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB094114 | 0.0 | AB094114.1 Arabidopsis thaliana At2g03060 mRNA for MADS-box protein, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001318186.1 | 0.0 | AGAMOUS-like 30 | ||||
Refseq | NP_001323519.1 | 0.0 | AGAMOUS-like 30 | ||||
Refseq | NP_001323523.1 | 0.0 | AGAMOUS-like 30 | ||||
Swissprot | Q1PFA4 | 0.0 | AGL30_ARATH; Agamous-like MADS-box protein AGL30 | ||||
TrEMBL | F4IS82 | 0.0 | F4IS82_ARATH; AGAMOUS-like 30 | ||||
STRING | AT2G03060.2 | 0.0 | (Arabidopsis thaliana) |
Link Out ? help Back to Top | |
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Phytozome | AT2G03060.1 |
Entrez Gene | 814835 |
iHOP | AT2G03060 |
wikigenes | AT2G03060 |