 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
AT2G02080.2 |
| Common Name | AtIDD4, F5O4.15, IDD4 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
|
| Family |
C2H2 |
| Protein Properties |
Length: 439aa MW: 47577.8 Da PI: 9.4888 |
| Description |
indeterminate(ID)-domain 4 |
| Gene Model |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 16 | 3.4e-05 | 6 | 28 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
+ C C+k F r nL+ H r H
AT2G02080.2 6 FICDVCNKGFQREQNLQLHRRGH 28
89*******************88 PP
|
| 2 | zf-C2H2 | 13.6 | 0.0002 | 82 | 104 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
+kC++C+k++ +s+ k H +t+
AT2G02080.2 82 WKCEKCSKRYAVQSDWKAHSKTC 104
58*****************9998 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009507 | Cellular Component | chloroplast |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046872 | Molecular Function | metal ion binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 439 aa
Download sequence Send
to blast |
MATNRFICDV CNKGFQREQN LQLHRRGHNL PWKLKQKSTK EVKRKVYLCP EPTCVHHDPS 60
RALGDLTGIK KHYYRKHGEK KWKCEKCSKR YAVQSDWKAH SKTCGTKEYR CDCGTIFSRR 120
DSYITHRAFC DALIQETARN PTVSFTSMTA ASSGVGSGGI YGRLGGGSAL SHHHLSDHPN 180
FGFNPLVGYN LNIASSDNRR DFIPQSSNPN FLIQSASSQG MLNTTPNNNN QSFMNQHGLI 240
QFDPVDNINL KSSGTNNSFF NLGFFQENTK NSETSLPSLY STDVLVHHRE ENLNAGSNVS 300
ATALLQKATQ MGSVTSNDPS ALFRGLASSS NSSSVIANHF GGGRIMENDN NGNLQGLMNS 360
LAAVNGGGGS GGSIFDVQFG DNGNMSGSDK LTLDFLGVGG MVRNVNRGGG GGGRGSARGG 420
VSLDGEAKFP EQNYPFGRG
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor that may act a transcriptional activator of nuclear-encoded photosynthetic gene expression (Probable). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:24821766, ECO:0000305|PubMed:19726569}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: Down-regulated by gibberellin. {ECO:0000305|PubMed:17933900}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AK117733 | 0.0 | AK117733.1 Arabidopsis thaliana At2g02080 mRNA for putative C2H2-type zinc finger protein, complete cds, clone: RAFL17-41-L01. |
| GenBank | BT005897 | 0.0 | BT005897.1 Arabidopsis thaliana At2g02080 gene, complete cds. |
| Publications
? help Back to Top |
- Riechmann JL, et al.
Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
Science, 2000. 290(5499): p. 2105-10
[PMID:11118137] - Seki M, et al.
Functional annotation of a full-length Arabidopsis cDNA collection.
Science, 2002. 296(5565): p. 141-5
[PMID:11910074] - Yamada K, et al.
Empirical analysis of transcriptional activity in the Arabidopsis genome.
Science, 2003. 302(5646): p. 842-6
[PMID:14593172] - Englbrecht CC,Schoof H,B
Conservation, diversification and expansion of C2H2 zinc finger proteins in the Arabidopsis thaliana genome.
BMC Genomics, 2004. 5(1): p. 39
[PMID:15236668] - Colasanti J, et al.
The maize INDETERMINATE1 flowering time regulator defines a highly conserved zinc finger protein family in higher plants.
BMC Genomics, 2006. 7: p. 158
[PMID:16784536] - Morita MT, et al.
A C2H2-type zinc finger protein, SGR5, is involved in early events of gravitropism in Arabidopsis inflorescence stems.
Plant J., 2006. 47(4): p. 619-28
[PMID:16813575] - Wagner R,Pfannschmidt T
Eukaryotic transcription factors in plastids--Bioinformatic assessment and implications for the evolution of gene expression machineries in plants.
Gene, 2006. 381: p. 62-70
[PMID:16934950] - Zentella R, et al.
Global analysis of della direct targets in early gibberellin signaling in Arabidopsis.
Plant Cell, 2007. 19(10): p. 3037-57
[PMID:17933900] - Reiland S, et al.
Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.
Plant Physiol., 2009. 150(2): p. 889-903
[PMID:19376835] - Kakizaki T, et al.
Coordination of plastid protein import and nuclear gene expression by plastid-to-nucleus retrograde signaling.
Plant Physiol., 2009. 151(3): p. 1339-53
[PMID:19726569] - Hanada K, et al.
Functional compensation of primary and secondary metabolites by duplicate genes in Arabidopsis thaliana.
Mol. Biol. Evol., 2011. 28(1): p. 377-82
[PMID:20736450] - Yoshida H, et al.
DELLA protein functions as a transcriptional activator through the DNA binding of the indeterminate domain family proteins.
Proc. Natl. Acad. Sci. U.S.A., 2014. 111(21): p. 7861-6
[PMID:24821766] - Mar
Large-scale identification of gibberellin-related transcription factors defines group VII ETHYLENE RESPONSE FACTORS as functional DELLA partners.
Plant Physiol., 2014. 166(2): p. 1022-32
[PMID:25118255] - Moreno-Risueno MA, et al.
Transcriptional control of tissue formation throughout root development.
Science, 2015. 350(6259): p. 426-30
[PMID:26494755]
|
