PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

G2-like

Protein Properties

Length: 256aa MW: 28612.7 Da PI: 7.1376

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AT2G02060.1	genome	TAIR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	104.8	5.1e-33	30	82	2	54
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54 prlrWtp+LH++Fv+ave LGG+++AtPk +l++m+vkgLt++hvkSHLQ+YR AT2G02060.1 30 PRLRWTPDLHRCFVHAVEILGGQHRATPKLVLKMMDVKGLTISHVKSHLQMYR 82 8**************************************************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.1E-30	26	82	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.292	26	86	IPR017930	Myb domain
TIGRFAMs	TIGR01557	5.4E-23	30	82	IPR006447	Myb domain, plants
SuperFamily	SSF46689	5.02E-15	30	82	IPR009057	Homeodomain-like
Pfam	PF00249	9.3E-9	31	82	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0016740	Molecular Function	transferase activity

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000084	anatomy	plant sperm cell
PO:0000293	anatomy	guard cell

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
MGKSSGRNGN GSFNGNKFHG VRPYVRSPVP RLRWTPDLHR CFVHAVEILG GQHRATPKLV 60 LKMMDVKGLT ISHVKSHLQM YRGGSKLTLE KPEESSSSSI RRRQDSEEDY YLHDNLSLHT 120 RNDCLLGFHS FPLSSHSSFR GGGGGRTKEQ QTSESGGYDD DADFLHIKKM NDTTTFLSHH 180 FPKGTEEWRE QEHEEEEEDL SLSLSLNHHH WRSNGSSVVS ETSEAAVSTC SAPFVSKDCF 240 GSSKIDLNLS ISLLGS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	5e-18	31	82	3	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	5e-18	31	82	3	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	5e-18	31	82	3	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	5e-18	31	82	3	54	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
At.41520	0.0	silique

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	AT2G02060
AtGenExpress	AT2G02060
ATTED-II	AT2G02060

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AT2G02060.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Phenotype -- Mutation ? help Back to Top
Source	ID
T-DNA Express	AT2G02060

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK229511	0.0	AK229511.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL17-14-B12.
GenBank	BT008556	0.0	BT008556.1 Arabidopsis thaliana clone U50358 unknown protein (At2g02060) mRNA, complete cds.
GenBank	BT008699	0.0	BT008699.1 Arabidopsis thaliana clone RAFL17-14-B12 (R50358) unknown protein (At2g02060) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001324905.1	0.0	Homeodomain-like superfamily protein
Refseq	NP_565281.2	0.0	Homeodomain-like superfamily protein
Swissprot	Q700D9	3e-66	MYBF_ARATH; Putative Myb family transcription factor At1g14600
TrEMBL	Q7X887	0.0	Q7X887_ARATH; Glycosyltransferase
STRING	AT2G02060.1	0.0	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4694	18	52
Representative plant	OGRP285	15	123

Link Out ? help Back to Top
Phytozome	AT2G02060.1
Entrez Gene	814737
iHOP	AT2G02060
wikigenes	AT2G02060

Publications ? help Back to Top
Riechmann JL, et al. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Science, 2000. 290(5499): p. 2105-10 [PMID:11118137] Egelund J, et al. Molecular characterization of two Arabidopsis thaliana glycosyltransferase mutants, rra1 and rra2, which have a reduced residual arabinose content in a polymer tightly associated with the cellulosic wall residue. Plant Mol. Biol., 2007. 64(4): p. 439-51 [PMID:17401635] Lao J, et al. The plant glycosyltransferase clone collection for functional genomics. Plant J., 2014. 79(3): p. 517-29 [PMID:24905498]