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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
AT1G80730.1 |
| Common Name | ATZFP1, F23A5.8, ZFP1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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| Family |
C2H2 |
| Protein Properties |
Length: 228aa MW: 25467.8 Da PI: 10.5605 |
| Description |
zinc-finger protein 1 |
| Gene Model |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 13.8 | 0.00017 | 68 | 90 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
++C++C + F ++ L H++ H
AT1G80730.1 68 FSCNYCQRKFYSSQALGGHQNAH 90
89******************988 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009640 | Biological Process | photomorphogenesis |
| GO:0003676 | Molecular Function | nucleic acid binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0008270 | Molecular Function | zinc ion binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 228 aa
Download sequence Send
to blast |
MEPSIKGDQE MLKIKKQGHQ DLELGLTLLS RGTATSSELN LIDSFKTSSS STSHHQHQQE 60
QLADPRVFSC NYCQRKFYSS QALGGHQNAH KRERTLAKRG QYYKMTLSSL PSSAFAFGHG 120
SVSRFASMAS LPLHGSVNNR STLGIQAHST IHKPSFLGRQ TTSLSHVFKQ SIHQKPTIGK 180
MLPEKFHLEV AGNNNSNMVA AKLERIGHFK SNQEDHNQFK KIDLTLKL
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Highly expressed in the shoot apex, including the apical meristem, developing leaves and developing vascular system. {ECO:0000269|PubMed:10794528, ECO:0000305|PubMed:8980531}. |
| Functional Description ? help
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| Source |
Description |
| TAIR | Encodes a zinc finger protein and is expressed at high levels in the shoot apex, including the apical meristem, developing leaves and the developing vascular system. expression induced three days post germination. T-DNA insertion mutant has a dominant phenotype in leaf initiation. |
| UniProt | May play a role in the regulation of shoot development, downstream of photomorphogenic activation (Probable). Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development (PubMed:24808098). {ECO:0000269|PubMed:24808098, ECO:0000305|PubMed:8980531}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Induced by white light in dark-grown seedlings. {ECO:0000269|PubMed:10794528}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | ATHZFPA | 0.0 | L39644.1 Arabidopsis thaliana zinc finger protein 1 (ZFP1) mRNA, complete cds. |
| GenBank | ATU53501 | 0.0 | U53501.1 Arabidopsis thaliana chromosome I cosmid g8261 DNA (cytosine-5-) methyltransferase, zinc finger protein 1, nucleoporin 98, poly A+ RNA export protein, plasma membrane ATPase 2, and serine/threonine protein kinase genes, complete cds. |
| GenBank | BT026406 | 0.0 | BT026406.1 Arabidopsis thaliana At1g80730 mRNA, complete cds. |
| GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
| GenBank | F23A5 | 0.0 | AC011713.2 Arabidopsis thaliana chromosome 1 BAC F23A5 sequence, complete sequence. |
| Publications
? help Back to Top |
- Takatsuji H
Zinc-finger proteins: the classical zinc finger emerges in contemporary plant science.
Plant Mol. Biol., 1999. 39(6): p. 1073-8
[PMID:10380795] - Chrispeels HE,Oettinger H,Janvier N,Tague BW
AtZFP1, encoding Arabidopsis thaliana C2H2 zinc-finger protein 1, is expressed downstream of photomorphogenic activation.
Plant Mol. Biol., 2000. 42(2): p. 279-90
[PMID:10794528] - Riechmann JL, et al.
Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
Science, 2000. 290(5499): p. 2105-10
[PMID:11118137] - Englbrecht CC,Schoof H,B
Conservation, diversification and expansion of C2H2 zinc finger proteins in the Arabidopsis thaliana genome.
BMC Genomics, 2004. 5(1): p. 39
[PMID:15236668] - Albert VA, et al.
Floral gene resources from basal angiosperms for comparative genomics research.
BMC Plant Biol., 2005. 5: p. 5
[PMID:15799777] - Kodaira KS, et al.
Arabidopsis Cys2/His2 zinc-finger proteins AZF1 and AZF2 negatively regulate abscisic acid-repressive and auxin-inducible genes under abiotic stress conditions.
Plant Physiol., 2011. 157(2): p. 742-56
[PMID:21852415] - Joseph MP, et al.
The Arabidopsis ZINC FINGER PROTEIN3 Interferes with Abscisic Acid and Light Signaling in Seed Germination and Plant Development.
Plant Physiol., 2014. 165(3): p. 1203-1220
[PMID:24808098] - Tague BW,Goodman HM
Characterization of a family of Arabidopsis zinc finger protein cDNAs.
Plant Mol. Biol., 1995. 28(2): p. 267-79
[PMID:7599312] - Tague BW,Gallant P,Goodman HM
Expression analysis of an Arabidopsis C2H2 zinc finger protein gene.
Plant Mol. Biol., 1996. 32(5): p. 785-96
[PMID:8980531]
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