PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

AP2

Protein Properties

Length: 303aa MW: 34237.7 Da PI: 7.0625

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AT1G79700.1	genome	TAIR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	52.4	1.3e-16	51	110	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d s+n k+ ++++lg ++ +e Aa+a++ a++k++g AT1G79700.1 51 SPYRGVTRHRWTGRYEAHLWDkNSWNDtqtKKgRQVYLGAYDEEEAAARAYDLAALKYWG 110 68*****************888876788557***********************98 PP
2	AP2	23.8	1.1e-07	153	194	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + f t eeAa a++ a+ +++g AT1G79700.1 153 SKYRGVARHHHNGRWEARIGRV-------------FATQEEAAIAYDIAAIEYRG 194 89**99******8774.............899*************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54171	5.36E-17	51	119	IPR016177	DNA-binding domain
PROSITE profile	PS51032	20.705	52	118	IPR001471	AP2/ERF domain
SMART	SM00380	1.2E-27	52	124	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	4.1E-16	53	118	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.3E-6	53	64	IPR001471	AP2/ERF domain
Pfam	PF00847	1.3E-12	53	110	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	5.04E-12	153	204	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	4.6E-8	154	203	IPR001471	AP2/ERF domain
SMART	SM00380	1.2E-15	154	208	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	13.208	154	202	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.3E-6	184	204	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006357	Biological Process	regulation of transcription from RNA polymerase II promoter
GO:0009873	Biological Process	ethylene-activated signaling pathway
GO:0045723	Biological Process	positive regulation of fatty acid biosynthetic process
GO:1901959	Biological Process	positive regulation of cutin biosynthetic process
GO:1904278	Biological Process	positive regulation of wax biosynthetic process
GO:0005634	Cellular Component	nucleus
GO:0000976	Molecular Function	transcription regulatory region sequence-specific DNA binding
GO:0000981	Molecular Function	RNA polymerase II transcription factor activity, sequence-specific DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000013	anatomy	cauline leaf
PO:0000037	anatomy	shoot apex
PO:0000230	anatomy	inflorescence meristem
PO:0000293	anatomy	guard cell
PO:0009005	anatomy	root
PO:0009009	anatomy	plant embryo
PO:0009025	anatomy	vascular leaf
PO:0009029	anatomy	stamen
PO:0009030	anatomy	carpel
PO:0009031	anatomy	sepal
PO:0009032	anatomy	petal
PO:0009046	anatomy	flower
PO:0009047	anatomy	stem
PO:0009052	anatomy	flower pedicel
PO:0020003	anatomy	plant ovule
PO:0020038	anatomy	petiole
PO:0020100	anatomy	hypocotyl
PO:0020137	anatomy	leaf apex
PO:0025022	anatomy	collective leaf structure
PO:0025281	anatomy	pollen
PO:0001054	developmental stage	vascular leaf senescent stage
PO:0001185	developmental stage	plant embryo globular stage
PO:0004507	developmental stage	plant embryo bilateral stage
PO:0007064	developmental stage	LP.12 twelve leaves visible stage
PO:0007095	developmental stage	LP.08 eight leaves visible stage
PO:0007098	developmental stage	LP.02 two leaves visible stage
PO:0007103	developmental stage	LP.10 ten leaves visible stage
PO:0007115	developmental stage	LP.04 four leaves visible stage
PO:0007123	developmental stage	LP.06 six leaves visible stage
PO:0007611	developmental stage	petal differentiation and expansion stage
PO:0007616	developmental stage	flowering stage

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
MAKVSGRSKK TIVDDEISDK TASASESASI ALTSKRKRKS PPRNAPLQRS SPYRGVTRHR 60 WTGRYEAHLW DKNSWNDTQT KKGRQVYLGA YDEEEAAARA YDLAALKYWG RDTLLNFPLP 120 SYDEDVKEME GQSKEEYIGS LRRKSSGFSR GVSKYRGVAR HHHNGRWEAR IGRVFATQEE 180 AAIAYDIAAI EYRGLNAVTN FDVSRYLNPN AAADKADSDS KPIRSPSREP ESSDDNKSPK 240 SEEVIEPSTS PEVIPTRRSF PDDIQTYFGC QDSGKLATEE DVIFDCFNSY INPGFYNEFD 300 YGP

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
At.48398	0.0	flower\| root\| silique

Expression -- Microarray ? help Back to Top
Source	ID	E-value
Genevisible	261395_at	1e-177
Expression Atlas	AT1G79700	-
AtGenExpress	AT1G79700	-
ATTED-II	AT1G79700	-

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Function -- GeneRIF ? help Back to Top
These results support the hypothesis that the PRD gene is not a checkpoint for phosphate-starvation responses, but acts specifically as a regulator of root architectural responses to Pi starvation. [PRD] [PMID: 18506479] AP2-2 (At1g79700) is involved in mediating starvation-related and hormonal signals. [PMID: 22754341]

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AT1G79700.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Phenotype -- Mutation ? help Back to Top
Source	ID
T-DNA Express	AT1G79700

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT029368	0.0	BT029368.1 Arabidopsis thaliana At1g79700 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_178088.2	0.0	Integrase-type DNA-binding superfamily protein
Swissprot	A0JPZ8	0.0	AP2L3_ARATH; AP2-like ethylene-responsive transcription factor At1g79700
TrEMBL	A8MQS2	0.0	A8MQS2_ARATH; Integrase-type DNA-binding superfamily protein
STRING	AT1G79700.2	0.0	(Arabidopsis thaliana)

Link Out ? help Back to Top
Phytozome	AT1G79700.1
Entrez Gene	844309
iHOP	AT1G79700
wikigenes	AT1G79700

Publications ? help Back to Top
Krizek BA,Prost V,Macias A AINTEGUMENTA promotes petal identity and acts as a negative regulator of AGAMOUS. Plant Cell, 2000. 12(8): p. 1357-66 [PMID:10948255] Riechmann JL, et al. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Science, 2000. 290(5499): p. 2105-10 [PMID:11118137] Seki M, et al. Functional annotation of a full-length Arabidopsis cDNA collection. Science, 2002. 296(5565): p. 141-5 [PMID:11910074] Dal Bosco C, et al. Inactivation of the chloroplast ATP synthase gamma subunit results in high non-photochemical fluorescence quenching and altered nuclear gene expression in Arabidopsis thaliana. J. Biol. Chem., 2004. 279(2): p. 1060-9 [PMID:14576160] Gong W, et al. Genome-wide ORFeome cloning and analysis of Arabidopsis transcription factor genes. Plant Physiol., 2004. 135(2): p. 773-82 [PMID:15208423] Contento AL,Kim SJ,Bassham DC Transcriptome profiling of the response of Arabidopsis suspension culture cells to Suc starvation. Plant Physiol., 2004. 135(4): p. 2330-47 [PMID:15310832] Nole-Wilson S,Tranby TL,Krizek BA AINTEGUMENTA-like (AIL) genes are expressed in young tissues and may specify meristematic or division-competent states. Plant Mol. Biol., 2005. 57(5): p. 613-28 [PMID:15988559] Sun K,Cui Y,Hauser BA Environmental stress alters genes expression and induces ovule abortion: reactive oxygen species appear as ovules commit to abort. Planta, 2005. 222(4): p. 632-42 [PMID:16133218] Kim S,Soltis PS,Wall K,Soltis DE Phylogeny and domain evolution in the APETALA2-like gene family. Mol. Biol. Evol., 2006. 23(1): p. 107-20 [PMID:16151182] Coupe SA, et al. Systemic signalling of environmental cues in Arabidopsis leaves. J. Exp. Bot., 2006. 57(2): p. 329-41 [PMID:16330523] Nakano T,Suzuki K,Fujimura T,Shinshi H Genome-wide analysis of the ERF gene family in Arabidopsis and rice. Plant Physiol., 2006. 140(2): p. 411-32 [PMID:16407444] Osuna D, et al. Temporal responses of transcripts, enzyme activities and metabolites after adding sucrose to carbon-deprived Arabidopsis seedlings. Plant J., 2007. 49(3): p. 463-91 [PMID:17217462] Fujita M, et al. Identification of stress-tolerance-related transcription-factor genes via mini-scale Full-length cDNA Over-eXpressor (FOX) gene hunting system. Biochem. Biophys. Res. Commun., 2007. 364(2): p. 250-7 [PMID:17937930] Camacho-Cristóbal JJ, et al. PRD, an Arabidopsis AINTEGUMENTA-like gene, is involved in root architectural changes in response to phosphate starvation. Planta, 2008. 228(3): p. 511-22 [PMID:18506479] Skinner DJ,Gasser CS Expression-based discovery of candidate ovule development regulators through transcriptional profiling of ovule mutants. BMC Plant Biol., 2009. 9: p. 29 [PMID:19291320] Hanada K, et al. Functional compensation of primary and secondary metabolites by duplicate genes in Arabidopsis thaliana. Mol. Biol. Evol., 2011. 28(1): p. 377-82 [PMID:20736450] Vogel MO,Gomez-Perez D,Probst N,Dietz KJ Combinatorial signal integration by APETALA2/Ethylene Response Factor (ERF)-transcription factors and the involvement of AP2-2 in starvation response. Int J Mol Sci, 2012. 13(5): p. 5933-51 [PMID:22754341] To A, et al. WRINKLED transcription factors orchestrate tissue-specific regulation of fatty acid biosynthesis in Arabidopsis. Plant Cell, 2012. 24(12): p. 5007-23 [PMID:23243127] Kilaru A, et al. Oil biosynthesis in a basal angiosperm: transcriptome analysis of Persea Americana mesocarp. BMC Plant Biol., 2015. 15: p. 203 [PMID:26276496] Elliott RC, et al. AINTEGUMENTA, an APETALA2-like gene of Arabidopsis with pleiotropic roles in ovule development and floral organ growth. Plant Cell, 1996. 8(2): p. 155-68 [PMID:8742707]