PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT1G77570.1 | ||||||||
Common Name | AtREN1, REN1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | HSF | ||||||||
Protein Properties | Length: 147aa MW: 17224.1 Da PI: 10.2929 | ||||||||
Description | Winged helix-turn-helix transcription repressor DNA-binding | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 54.9 | 2.4e-17 | 27 | 120 | 2 | 101 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT.--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkh.snfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 F +++ye+++d++++ +iswse++nsf++++ ef +++Lpky +n++ F L gFk vk +++ eF h+ F ++k el++k+ AT1G77570.1 27 FYMRVYEVVDDASTDAIISWSESNNSFIIWNVGEFYRRILPKYVDLgTNLSRFFSNLRSHGFKIVKGRTGV-------LEFGHEDFIRDKLELMKKM 116 8999***************************************985379999***************9987.......**************99997 PP XXXX CS HSF_DNA-bind 98 krkk 101 k AT1G77570.1 117 VSDK 120 6544 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 4.4E-18 | 22 | 122 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 1.05E-19 | 26 | 116 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 2.6E-19 | 26 | 113 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 3.2E-15 | 27 | 116 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 5.2E-5 | 27 | 50 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 5.2E-5 | 79 | 91 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0000293 | anatomy | guard cell | ||||
PO:0009005 | anatomy | root | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009010 | anatomy | seed | ||||
PO:0009029 | anatomy | stamen | ||||
PO:0009030 | anatomy | carpel | ||||
PO:0009031 | anatomy | sepal | ||||
PO:0009032 | anatomy | petal | ||||
PO:0009046 | anatomy | flower | ||||
PO:0009047 | anatomy | stem | ||||
PO:0009052 | anatomy | flower pedicel | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0025281 | anatomy | pollen | ||||
PO:0001078 | developmental stage | plant embryo cotyledonary stage | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0001185 | developmental stage | plant embryo globular stage | ||||
PO:0004507 | developmental stage | plant embryo bilateral stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage | ||||
PO:0007616 | developmental stage | flowering stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 147 aa Download sequence Send to blast |
MLKSRNPNYS KILICEVCEV LGMGYNFYMR VYEVVDDAST DAIISWSESN NSFIIWNVGE 60 FYRRILPKYV DLGTNLSRFF SNLRSHGFKI VKGRTGVLEF GHEDFIRDKL ELMKKMVSDK 120 RKARKAAKSK ARKARVQVEF LFQHLQI |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.34454 | 0.0 | flower |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
Genevisible | 259711_at | 0.0 | ||||
Expression Atlas | AT1G77570 | - | ||||
AtGenExpress | AT1G77570 | - | ||||
ATTED-II | AT1G77570 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT1G77570.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT1G77570 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC010704 | 0.0 | AC010704.6 Arabidopsis thaliana chromosome 1 BAC T5M16 genomic sequence, complete sequence. | |||
GenBank | AK176811 | 0.0 | AK176811.1 Arabidopsis thaliana mRNA for putative DNA-binding protein, complete cds, clone: RAFL25-36-D05. | |||
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_177880.2 | 1e-106 | Winged helix-turn-helix transcription repressor DNA-binding protein | ||||
TrEMBL | Q67XK8 | 1e-105 | Q67XK8_ARATH; Putative DNA-binding protein | ||||
STRING | AT1G77570.1 | 1e-105 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3839 | 14 | 57 |
Link Out ? help Back to Top | |
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Phytozome | AT1G77570.1 |
Entrez Gene | 844092 |
iHOP | AT1G77570 |
wikigenes | AT1G77570 |
Publications ? help Back to Top | |||
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