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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
AT1G76880.1 |
Common Name | F7O12.5 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family |
Trihelix |
Protein Properties |
Length: 603aa MW: 67879 Da PI: 6.6967 |
Description |
Trihelix family protein |
Gene Model |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 93.2 | 2.6e-29 | 61 | 145 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87
rW++qe+laL+++r++m+ ++r+++ k+plWeevs+km+e+g+ r++k+Ckek+en+ k++k++keg+ ++++++ t+++fdqlea
AT1G76880.1 61 RWPRQETLALLKIRSDMGIAFRDASVKGPLWEEVSRKMAEHGYIRNAKKCKEKFENVYKYHKRTKEGRTGKSEGK--TYRFFDQLEA 145
8********************************************************************975544..6*******85 PP
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2 | trihelix | 105.3 | 4.5e-33 | 408 | 493 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87
rW+k e+ aLi++r++++++++++ k+plWee+s+ mr+ gf+r++k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ql+a
AT1G76880.1 408 RWPKVEIEALIKLRTNLDSKYQENGPKGPLWEEISAGMRRLGFNRNSKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLDA 493
8*********************************************************************8.99***********85 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0010192 | Biological Process | mucilage biosynthetic process |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 603 aa
Download sequence Send
to blast |
MMQLGGGTPT TTAAATTVTT ATAPPPQSNN NDSAATEAAA AAVGAFEVSE EMHDRGFGGN 60 RWPRQETLAL LKIRSDMGIA FRDASVKGPL WEEVSRKMAE HGYIRNAKKC KEKFENVYKY 120 HKRTKEGRTG KSEGKTYRFF DQLEALESQS TTSLHHHQQQ TPLRPQQNNN NNNNNNNNSS 180 IFSTPPPVTT VMPTLPSSSI PPYTQQINVP SFPNISGDFL SDNSTSSSSS YSTSSDMEMG 240 GGTATTRKKR KRKWKVFFER LMKQVVDKQE ELQRKFLEAV EKREHERLVR EESWRVQEIA 300 RINREHEILA QERSMSAAKD AAVMAFLQKL SEKQPNQPQP QPQPQQVRPS MQLNNNNQQQ 360 PPQRSPPPQP PAPLPQPIQA VVSTLDTTKT DNGGDQNMTP AASASSSRWP KVEIEALIKL 420 RTNLDSKYQE NGPKGPLWEE ISAGMRRLGF NRNSKRCKEK WENINKYFKK VKESNKKRPE 480 DSKTCPYFHQ LDALYRERNK FHSNNNIAAS SSSSGLVKPD NSVPLMVQPE QQWPPAVTTA 540 TTTPAAAQPD QQSQPSEQNF DDEEGTDEEY DDEDEEEENE EEEGGEFELV PSNNNNNKTT 600 NNL
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Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 246 | 251 | RKKRKR |
2 | 246 | 252 | RKKRKRK |
3 | 247 | 252 | KKRKRK |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor that binds specific DNA sequence. {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK230152 | 0.0 | AK230152.1 Arabidopsis thaliana mRNA for hypothetical protein, partial sequence., clone: RAFL22-85-G13. |
Publications
? help Back to Top |
- Riechmann JL, et al.
Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Science, 2000. 290(5499): p. 2105-10 [PMID:11118137] - Ditt RF, et al.
The Arabidopsis thaliana transcriptome in response to Agrobacterium tumefaciens. Mol. Plant Microbe Interact., 2006. 19(6): p. 665-81 [PMID:16776300] - Bechtold U, et al.
Impact of chloroplastic- and extracellular-sourced ROS on high light-responsive gene expression in Arabidopsis. J. Exp. Bot., 2008. 59(2): p. 121-33 [PMID:18212028] - Hanada K, et al.
Functional compensation of primary and secondary metabolites by duplicate genes in Arabidopsis thaliana. Mol. Biol. Evol., 2011. 28(1): p. 377-82 [PMID:20736450] - Gaudinier A, et al.
Enhanced Y1H assays for Arabidopsis. Nat. Methods, 2011. 8(12): p. 1053-5 [PMID:22037706] - Voiniciuc C,Yang B,Schmidt MH,G
Starting to gel: how Arabidopsis seed coat epidermal cells produce specialized secondary cell walls. Int J Mol Sci, 2015. 16(2): p. 3452-73 [PMID:25658798]
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