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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
AT1G76320.2 |
Common Name | CPD25, F15M4.18, FRS4, T23E18.25 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family |
FAR1 |
Protein Properties |
Length: 730aa MW: 84952.2 Da PI: 7.0878 |
Description |
FAR1-related sequence 4 |
Gene Model |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | FAR1 | 84 | 2.3e-26 | 12 | 97 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91
fY++YAk+vGF + k +s++s+ ++e+++++f C ++g++++++++ ++ra+ ++gCka+++vk++ dgkw+v+++++eHnH+l p
AT1G76320.2 12 FYKDYAKSVGFGTAKLSSRRSRASKEFIDAKFSCIRYGSKQQSDDA----INPRASPKIGCKASMHVKRRPDGKWYVYSFVKEHNHDLLP 97
9****************************************99887....9************************************975 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0009585 | Biological Process | red, far-red light phototransduction |
GO:0010018 | Biological Process | far-red light signaling pathway |
GO:0042753 | Biological Process | positive regulation of circadian rhythm |
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
Protein Sequence Length: 730 aa
Download sequence Send
to blast |
MEFETHEDAY LFYKDYAKSV GFGTAKLSSR RSRASKEFID AKFSCIRYGS KQQSDDAINP 60 RASPKIGCKA SMHVKRRPDG KWYVYSFVKE HNHDLLPEQA HYFRSHRNTE LVKSNDSRLR 120 RKKNTPLTDC KHLSAYHDLD FIDGYMRNQH DKGRRLVLDT GDAEILLEFL MRMQEENPKF 180 FFAVDFSEDH LLRNVFWVDA KGIEDYKSFS DVVSFETSYF VSKYKVPLVL FVGVNHHVQP 240 VLLGCGLLAD DTVYTYVWLM QSWLVAMGGQ KPKVMLTDQN NAIKAAIAAV LPETRHCYCL 300 WHVLDQLPRN LDYWSMWQDT FMKKLFKCIY RSWSEEEFDR RWLKLIDKFH LRDVPWMRSL 360 YEERKFWAPT FMRGITFAGL SMRCRSESVN SLFDRYVHPE TSLKEFLEGY GLMLEDRYEE 420 EAKADFDAWH EAPELKSPSP FEKQMLLVYS HEIFRRFQLE VLGAAACHLT KESEEGTTYS 480 VKDFDDEQKY LVDWDEFKSD IYCSCRSFEY KGYLCRHAIV VLQMSGVFTI PINYVLQRWT 540 NAARNRHQIS RNLELVQSNI RRFNDLCRRA IILGEEGSLS QESYDIAMFA MKEAFKQCAV 600 TINTIKHPAR CEEAAIQAGD PVQEENQYGS TSTQIGPEPN IHAGNVPWQA ETRREKRSSL 660 NNTSKKHVAQ SETVGEGSQE GFQHVADPRQ SQAVLAGQFH NTMPGVFQNL INTNFQNIPA 720 TNMHQNNPPG
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}. |
Functional Description ? help
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Source |
Description |
UniProt | Putative transcription activator involved in regulating light control of development. |
Function -- GeneRIF ? help
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- FRS4/CPD25 and FHY3/CPD45 function as a heterodimer that cooperatively activates ARC5.
[PMID: 23662592]
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Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK221406 | 0.0 | AK221406.1 Arabidopsis thaliana mRNA for putative phytochrome A signaling protein, complete cds, clone: RAFL25-49-E06. |
GenBank | BT010456 | 0.0 | BT010456.1 Arabidopsis thaliana far-red impaired response protein -related (At1g76320) mRNA, complete cds. |