PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT1G71200.1
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 234aa    MW: 26390 Da    PI: 8.1461
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT1G71200.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.48.4e-1161116155
                  CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                  +++ hn+ Er RR r+  ++ +L +llP  +s+ ++kK s  +i   ++ YI +Lq
  AT1G71200.1  61 KKQDHNAKERLRRMRLHASYLTLGTLLPDhSSSSSKKKWSAPSIIDNVITYIPKLQ 116
                  6899*************************666777777***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-1156128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-1060119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.29760115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-761116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-666121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MSSQPNHQTS ISSLLHDRLH IPPAETIVEK ESAEKDTCQS QRKRKEPVLH EVDGSSSGAA  60
KKQDHNAKER LRRMRLHASY LTLGTLLPDH SSSSSKKKWS APSIIDNVIT YIPKLQNEVG  120
ELTLRKQKLV ELERRGPSIR AISVLELGES GYEAVVQICL KKENEDEFSN LLHVMEVQGL  180
SVLSASTSQV CREQRVVCYN FHVKMDEKPC EGDDYITVLK NNIISSLRDN TKCK
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2402543490.0
Genevisible259898_at0.0
Expression AtlasAT1G71200-
AtGenExpressAT1G71200-
ATTED-IIAT1G71200-
Function -- GeneRIF ? help Back to Top
  1. CITF1 and SPL7 regulate Cu uptake and delivery to anthers, thereby influencing fertility, and highlight the relationship between Cu homeostasis, CITF1, SPL7, and the jasmonic acid metabolic pathway.[CITF1]
    [PMID: 29114014]
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT1G71200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT1G71200
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0161620.0AC016162.5 Arabidopsis thaliana chromosome 1 BAC F3I17 genomic sequence, complete sequence.
GenBankAC0169720.0AC016972.7 Arabidopsis thaliana chromosome 1 BAC F23N20 genomic sequence, complete sequence.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_177276.41e-173basic helix-loop-helix (bHLH) DNA-binding superfamily protein
SwissprotF4I8F91e-174BH160_ARATH; Transcription factor bHLH160
TrEMBLA0A1P8AVG11e-161A0A1P8AVG1_ARATH; Basic helix-loop-helix (BHLH) DNA-binding superfamily protein
STRINGAT1G71200.11e-172(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM105582234
Representative plantOGRP28261129
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Peltier JB, et al.
    Central functions of the lumenal and peripheral thylakoid proteome of Arabidopsis determined by experimentation and genome-wide prediction.
    Plant Cell, 2002. 14(1): p. 211-36
    [PMID:11826309]
  3. Heim MA, et al.
    The basic helix-loop-helix transcription factor family in plants: a genome-wide study of protein structure and functional diversity.
    Mol. Biol. Evol., 2003. 20(5): p. 735-47
    [PMID:12679534]
  4. Bailey PC, et al.
    Update on the basic helix-loop-helix transcription factor gene family in Arabidopsis thaliana.
    Plant Cell, 2003. 15(11): p. 2497-502
    [PMID:14600211]
  5. van de Mortel JE, et al.
    Large expression differences in genes for iron and zinc homeostasis, stress response, and lignin biosynthesis distinguish roots of Arabidopsis thaliana and the related metal hyperaccumulator Thlaspi caerulescens.
    Plant Physiol., 2006. 142(3): p. 1127-47
    [PMID:16998091]
  6. Yan J, et al.
    Arabidopsis Pollen Fertility Requires the Transcription Factors CITF1 and SPL7 That Regulate Copper Delivery to Anthers and Jasmonic Acid Synthesis.
    Plant Cell, 2017. 29(12): p. 3012-3029
    [PMID:29114014]