PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

G2-like

Protein Properties

Length: 336aa MW: 37896.1 Da PI: 6.5165

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AT1G69580.1	genome	TAIR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.7	4.7e-32	34	88	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wt++LH++F+eav+qLGG++kAtPk ++++m+++gLtl+h+kSHLQkYRl AT1G69580.1 34 KPRLKWTCDLHHKFIEAVNQLGGPNKATPKGLMKVMEIPGLTLYHLKSHLQKYRL 88 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.2E-28	32	89	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.66E-15	33	88	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	9.9E-22	34	89	IPR006447	Myb domain, plants
Pfam	PF00249	8.1E-6	36	87	IPR001005	SANT/Myb domain
Pfam	PF14379	5.5E-23	137	183	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000013	anatomy	cauline leaf
PO:0000037	anatomy	shoot apex
PO:0000230	anatomy	inflorescence meristem
PO:0000293	anatomy	guard cell
PO:0008019	anatomy	leaf lamina base
PO:0009005	anatomy	root
PO:0009006	anatomy	shoot system
PO:0009009	anatomy	plant embryo
PO:0009010	anatomy	seed
PO:0009025	anatomy	vascular leaf
PO:0009029	anatomy	stamen
PO:0009030	anatomy	carpel
PO:0009031	anatomy	sepal
PO:0009032	anatomy	petal
PO:0009046	anatomy	flower
PO:0009047	anatomy	stem
PO:0009052	anatomy	flower pedicel
PO:0020030	anatomy	cotyledon
PO:0020038	anatomy	petiole
PO:0020100	anatomy	hypocotyl
PO:0020137	anatomy	leaf apex
PO:0025022	anatomy	collective leaf structure
PO:0025281	anatomy	pollen
PO:0001054	developmental stage	vascular leaf senescent stage
PO:0001078	developmental stage	plant embryo cotyledonary stage
PO:0001081	developmental stage	mature plant embryo stage
PO:0001185	developmental stage	plant embryo globular stage
PO:0004507	developmental stage	plant embryo bilateral stage
PO:0007064	developmental stage	LP.12 twelve leaves visible stage
PO:0007095	developmental stage	LP.08 eight leaves visible stage
PO:0007098	developmental stage	LP.02 two leaves visible stage
PO:0007103	developmental stage	LP.10 ten leaves visible stage
PO:0007115	developmental stage	LP.04 four leaves visible stage
PO:0007123	developmental stage	LP.06 six leaves visible stage
PO:0007611	developmental stage	petal differentiation and expansion stage
PO:0007616	developmental stage	flowering stage

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence Send to blast
MCLLMEINNN ANNTNTTIDN HKAKMSLVLS TDAKPRLKWT CDLHHKFIEA VNQLGGPNKA 60 TPKGLMKVME IPGLTLYHLK SHLQKYRLGK SMKFDDNKLE VSSASENQEV ESKNDSRDLR 120 GCSVTEENSN PAKEGLQITE ALQMQMEVQK KLHEQIEVQR HLQVKIEAQG KYLQSVLMKA 180 QQTLAGYSSS NLGMDFARTE LSRLASMVNR GCPSTSFSEL TQVEEEEEGF LWYKKPENRG 240 ISQLRCSVES SLTSSETSET KLDTDNNLNK SIELPLMEIN SEVMKGKKRS INDVVCVEQP 300 LMKRAFGVDD DEHLKLSLNT YKKDMEACTN IGLGFN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	5e-20	33	90	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	5e-20	33	90	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	5e-20	33	90	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	5e-20	33	90	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	5e-20	33	90	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	5e-20	33	90	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	5e-20	33	90	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	5e-20	33	90	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Expression -- Microarray ? help Back to Top
Source	ID	E-value
Genevisible	259832_at	0.0
Expression Atlas	AT1G69580	-
AtGenExpress	AT1G69580	-
ATTED-II	AT1G69580	-

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AT1G69580.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Phenotype -- Mutation ? help Back to Top
Source	ID
T-DNA Express	AT1G69580

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT029516	0.0	BT029516.1 Arabidopsis thaliana At1g69580 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_177117.2	0.0	Homeodomain-like superfamily protein
Swissprot	F4I274	0.0	PHL8_ARATH; Myb family transcription factor PHL8
TrEMBL	A0A178WNY6	0.0	A0A178WNY6_ARATH; Uncharacterized protein
STRING	AT1G69580.2	0.0	(Arabidopsis thaliana)

Link Out ? help Back to Top
Phytozome	AT1G69580.1
Entrez Gene	843294
iHOP	AT1G69580
wikigenes	AT1G69580

Publications ? help Back to Top
Riechmann JL, et al. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Science, 2000. 290(5499): p. 2105-10 [PMID:11118137] Rubio V, et al. A conserved MYB transcription factor involved in phosphate starvation signaling both in vascular plants and in unicellular algae. Genes Dev., 2001. 15(16): p. 2122-33 [PMID:11511543] Sottosanto JB,Saranga Y,Blumwald E Impact of AtNHX1, a vacuolar Na+/H+ antiporter, upon gene expression during short- and long-term salt stress in Arabidopsis thaliana. BMC Plant Biol., 2007. 7: p. 18 [PMID:17411438] Ascencio-Ib Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection. Plant Physiol., 2008. 148(1): p. 436-54 [PMID:18650403] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]