PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT1G69540.1 | ||||||||
Common Name | AGL94 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 344aa MW: 39220.8 Da PI: 7.1648 | ||||||||
Description | AGAMOUS-like 94 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 63.9 | 1.7e-20 | 11 | 53 | 3 | 45 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 +n rq t++kRr+gi+KKA+ELS+LCd++v +++fs+ gk AT1G69540.1 11 LQNMNGRQCTYTKRRHGIMKKAKELSILCDIDVVLLMFSPMGK 53 568888**********************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.8E-27 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 23.058 | 1 | 53 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 4.30E-22 | 2 | 81 | No hit | No description |
SuperFamily | SSF55455 | 6.02E-24 | 2 | 93 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.1E-16 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.2E-16 | 12 | 53 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.1E-16 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.1E-16 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000293 | anatomy | guard cell |
Sequence ? help Back to Top |
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Protein Sequence Length: 344 aa Download sequence Send to blast |
MGRVKLKIKK LQNMNGRQCT YTKRRHGIMK KAKELSILCD IDVVLLMFSP MGKASICIGK 60 HSIGEVIAKF AQLSPQERAK RKLENLEALR KTFMKANHDI DISKFLDRIS TPTVEVLSEK 120 IRFLQTQLSD IHTRLSYWTD VDNIDSVDVL QQLEHSLRQS LAQIYGRKAS MPQRQQQQLM 180 SSQCKNQLQT EIDIDFGMEM EQQLENFSWV RTDENMNVPI EEEDPNLQLH HMYKDITCSA 240 SSALGNYSGL FSKSSDILQK LETGSIPGTS ADPNQQFSNL SFLNDQKLKQ LAEWNLLGSP 300 ADYYVSQILE ASYKPQIGGK NNGASSETLP YVAVFDDPLY FWPN |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 186494148 | 0.0 | ||||
Genevisible | 256298_at | 9e-77 | ||||
Expression Atlas | AT1G69540 | - | ||||
AtGenExpress | AT1G69540 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
TAIR | Encodes a member of the MIKC (MADS box, Keratin binding domain, and C terminal domain containing )family of transcriptional regulators. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT1G69540.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT1G69540 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB115013 | 0.0 | AB115013.1 Arabidopsis thaliana At1g69540 mRNA for MADS-box protein, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_177113.3 | 0.0 | AGAMOUS-like 94 | ||||
TrEMBL | Q766C0 | 0.0 | Q766C0_ARATH; AGAMOUS-like 94 | ||||
STRING | AT1G69540.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14956 | 16 | 20 | Representative plant | OGRP5946 | 11 | 19 |
Link Out ? help Back to Top | |
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Phytozome | AT1G69540.1 |
Entrez Gene | 843289 |
iHOP | AT1G69540 |
wikigenes | AT1G69540 |