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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
AT1G68200.2 |
| Common Name | T22E19.17 |
| Organism |
|
| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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| Family |
C3H |
| Protein Properties |
Length: 307aa MW: 34099.1 Da PI: 8.7083 |
| Description |
C3H family protein |
| Gene Model |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 47.3 | 3.4e-15 | 223 | 247 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26
ktelC+ +++tGtC+yGd C+FaHg
AT1G68200.2 223 KTELCNKWQETGTCPYGDHCQFAHG 247
9***********************8 PP
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| 2 | zf-CCCH | 19.9 | 1.3e-06 | 260 | 285 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
ykte Cr +++ C+yG rC+F H+
AT1G68200.2 260 YKTEVCRMVLAGDNCPYGHRCHFRHS 285
9**********55**********998 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0061158 | Biological Process | 3'-UTR-mediated mRNA destabilization |
| GO:0005829 | Cellular Component | cytosol |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0003730 | Molecular Function | mRNA 3'-UTR binding |
| GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
| GO:0046872 | Molecular Function | metal ion binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 307 aa
Download sequence Send
to blast |
MENKIAPFSY SGSSAGNSSS GGVVSSSLYS DQLYKSTRNI MQQRQDMVNR EALCYTRLHE 60
ASLEAEALRL ENTELRSMNL RLKNELNSLI RSSIQNRFDH RSPLRMLSNL SIGGNDADEV 120
ENQNRTVNRD DVNDKSPTSV MENEDLNRSS LPKSISVRSN GYSKASQGGG GAAAQSGKPR 180
GTVTKPGTCG QVSTTKVYVR GGGKKEDQEE EIEVEVYNQG MTKTELCNKW QETGTCPYGD 240
HCQFAHGIKE LRPVIRHPRY KTEVCRMVLA GDNCPYGHRC HFRHSLSEQE KLVAAGFKPK 300
SSLKLIT
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| Function -- GeneRIF ? help
Back to Top |
- The Arabidopsis thaliana CALLOSE DEFECTIVE MICROSPORE1 (CDM1) gene, encoding a tandem CCCH-type zinc finger protein, plays an important role in regulation of callose metabolism in male meiocytes.[CDM1]
[PMID: 24567187] - C3H14 and its homologue C3H15 redundantly regulate secondary wall formation and they additionally function in anther development. [C3H15]
[PMID: 25732536]
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| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | DQ446410 | 0.0 | DQ446410.1 Arabidopsis thaliana clone pENTR221-At1g68200 zinc finger family protein (At1g68200) mRNA, complete cds. |
| Publications
? help Back to Top |
- Riechmann JL, et al.
Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
Science, 2000. 290(5499): p. 2105-10
[PMID:11118137] - Vandepoele K, et al.
Genome-wide identification of potential plant E2F target genes.
Plant Physiol., 2005. 139(1): p. 316-28
[PMID:16126853] - Delaney KJ, et al.
Calmodulin interacts with and regulates the RNA-binding activity of an Arabidopsis polyadenylation factor subunit.
Plant Physiol., 2006. 140(4): p. 1507-21
[PMID:16500995] - Underwood BA,Vanderhaeghen R,Whitford R,Town CD,Hilson P
Simultaneous high-throughput recombinational cloning of open reading frames in closed and open configurations.
Plant Biotechnol. J., 2006. 4(3): p. 317-24
[PMID:17147637] - Culligan KM,Robertson CE,Foreman J,Doerner P,Britt AB
ATR and ATM play both distinct and additive roles in response to ionizing radiation.
Plant J., 2006. 48(6): p. 947-61
[PMID:17227549] - Wang D, et al.
Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice.
BMC Genomics, 2008. 9: p. 44
[PMID:18221561] - Peiffer JA, et al.
A spatial dissection of the Arabidopsis floral transcriptome by MPSS.
BMC Plant Biol., 2008. 8: p. 43
[PMID:18426585] - Brady SM, et al.
A stele-enriched gene regulatory network in the Arabidopsis root.
Mol. Syst. Biol., 2011. 7: p. 459
[PMID:21245844] - Lu P, et al.
The Arabidopsis CALLOSE DEFECTIVE MICROSPORE1 gene is required for male fertility through regulating callose metabolism during microsporogenesis.
Plant Physiol., 2014. 164(4): p. 1893-904
[PMID:24567187] - Chai G, et al.
Arabidopsis C3H14 and C3H15 have overlapping roles in the regulation of secondary wall thickening and anther development.
J. Exp. Bot., 2015. 66(9): p. 2595-609
[PMID:25732536]
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