PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AT1G65300.1

Common Name

AGL38, PHE2, T8F5.8

Organism

Arabidopsis thaliana

Taxonomic ID

3702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

M-type_MADS

Protein Properties

Length: 278aa MW: 31658 Da PI: 5.2253

Description

AGAMOUS-like 38

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AT1G65300.1	genome	TAIR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	48.7	9.8e-16	10	53	3	46
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46 ien+ r++tf+kR++g+ KK EL +LC++e++ +++s+ + + AT1G65300.1 10 IENSVSRKTTFTKRKKGMTKKLTELVTLCGVEACAVVYSPFNSI 53 9**************************************97765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	15.937	1	55	IPR002100	Transcription factor, MADS-box
CDD	cd00266	9.70E-32	1	84	No hit	No description
SMART	SM00432	2.8E-19	1	59	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	2.62E-22	2	84	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.9E-9	2	22	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.4E-16	10	51	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.9E-9	22	37	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.9E-9	37	58	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000423	anatomy	plant zygote
PO:0009089	anatomy	endosperm

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
MKRKMKLSLI ENSVSRKTTF TKRKKGMTKK LTELVTLCGV EACAVVYSPF NSIPEAWPSR 60 EGVEDVVSKF MELSVLDRTK KMVDQETFIS QRIAKEKEQL QKLRDENHNS QIRELMFGCL 120 KGETNVYNLD GRDLQDLSLY IDKYLNGLTR RIEILIENGE SSSSLPLPIV ANAAAPVGFD 180 GPMFQYHNQN QQKPVQFQYQ ALYDFYDQIP KKIHGFNMNM NKDSNQSMVL DLNQNLNDGE 240 DEGIPCMDNN NYHPEIDCLA TVTTAPTDVC APNITNDL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	15	30	RKTTFTKRKKGMTKKL

Expression -- Microarray ? help Back to Top
Source	ID	E-value
Genevisible	264214_s_at	4e-66
Expression Atlas	AT1G65300	-
AtGenExpress	AT1G65300	-

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Male gametophyte, embryo and endosperm. {ECO:0000269\|PubMed:12815071}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the development of gametophytes and seeds.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AT1G65300.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by MEA in seeds, and by PKL after germination. {ECO:0000269\|PubMed:12815071, ECO:0000269\|PubMed:16359393}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Interaction ? help Back to Top
Source	Intact With
IntAct	Search Q7XJK8

Phenotype -- Mutation ? help Back to Top
Source	ID
T-DNA Express	AT1G65300

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY141245	0.0	AY141245.1 Arabidopsis thaliana MADS-box protein AGL38 mRNA, complete cds.
GenBank	CP002684	0.0	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBank	T8F5	0.0	AC004512.2 Arabidopsis thaliana chromosome 1 BAC T8F5 sequence, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_176709.2	0.0	AGAMOUS-like 38
Swissprot	Q7XJK8	0.0	PHE2_ARATH; MADS-box transcription factor PHERES 2
TrEMBL	A0A178WQA2	0.0	A0A178WQA2_ARATH; PHE2
STRING	AT1G65300.1	0.0	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM70	28	415
Representative plant	OGRP114	13	173

Link Out ? help Back to Top
Phytozome	AT1G65300.1
Entrez Gene	842838
iHOP	AT1G65300
wikigenes	AT1G65300

Publications ? help Back to Top
Riechmann JL, et al. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Science, 2000. 290(5499): p. 2105-10 [PMID:11118137] De Bodt S, et al. Genomewide structural annotation and evolutionary analysis of the type I MADS-box genes in plants. J. Mol. Evol., 2003. 56(5): p. 573-86 [PMID:12698294] Köhler C, et al. The Polycomb-group protein MEDEA regulates seed development by controlling expression of the MADS-box gene PHERES1. Genes Dev., 2003. 17(12): p. 1540-53 [PMID:12815071] Parenicová L, et al. Molecular and phylogenetic analyses of the complete MADS-box transcription factor family in Arabidopsis: new openings to the MADS world. Plant Cell, 2003. 15(7): p. 1538-51 [PMID:12837945] Kofuji R, et al. Evolution and divergence of the MADS-box gene family based on genome-wide expression analyses. Mol. Biol. Evol., 2003. 20(12): p. 1963-77 [PMID:12949148] de Folter S, et al. Comprehensive interaction map of the Arabidopsis MADS Box transcription factors. Plant Cell, 2005. 17(5): p. 1424-33 [PMID:15805477] Li HC, et al. PICKLE acts during germination to repress expression of embryonic traits. Plant J., 2005. 44(6): p. 1010-22 [PMID:16359393] Popescu SC, et al. Differential binding of calmodulin-related proteins to their targets revealed through high-density Arabidopsis protein microarrays. Proc. Natl. Acad. Sci. U.S.A., 2007. 104(11): p. 4730-5 [PMID:17360592] Ngo QA,Moore JM,Baskar R,Grossniklaus U,Sundaresan V Arabidopsis GLAUCE promotes fertilization-independent endosperm development and expression of paternally inherited alleles. Development, 2007. 134(22): p. 4107-17 [PMID:17965055] Bemer M,Wolters-Arts M,Grossniklaus U,Angenent GC The MADS domain protein DIANA acts together with AGAMOUS-LIKE80 to specify the central cell in Arabidopsis ovules. Plant Cell, 2008. 20(8): p. 2088-101 [PMID:18713950] Day RC,Herridge RP,Ambrose BA,Macknight RC Transcriptome analysis of proliferating Arabidopsis endosperm reveals biological implications for the control of syncytial division, cytokinin signaling, and gene expression regulation. Plant Physiol., 2008. 148(4): p. 1964-84 [PMID:18923020] Villar CB,Erilova A,Makarevich G,Tr Control of PHERES1 imprinting in Arabidopsis by direct tandem repeats. Mol Plant, 2009. 2(4): p. 654-60 [PMID:19825646] Bemer M,Heijmans K,Airoldi C,Davies B,Angenent GC An atlas of type I MADS box gene expression during female gametophyte and seed development in Arabidopsis. Plant Physiol., 2010. 154(1): p. 287-300 [PMID:20631316] Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]