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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
AT1G64530.1 |
Common Name | F1N19.10, NLP6 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family |
Nin-like |
Protein Properties |
Length: 841aa MW: 93863.5 Da PI: 6.3008 |
Description |
Nin-like family protein |
Gene Model |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | RWP-RK | 92.4 | 3.4e-29 | 554 | 604 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52
ek+isle+l++yF++++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++
AT1G64530.1 554 EKTISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 604
79***********************************************97 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
Protein Sequence Length: 841 aa
Download sequence Send
to blast |
MELDDLDLSG SWPLDQITFA SNFKSPVIFS SSEQPFSPLW SFSETSGDVG GELYSAAVAP 60 TRFTDYSVLL ASSESETTTK ENNQVPSPSW GIMPLENPDS YCAIKAKMTQ ALRYFKESTG 120 QQHVLAQVWA PVKNRGRYVL TTSGQPFVLG PNSNGLNQYR MVSLTYMFSL DGERDGELGL 180 PGRVFRKKLP EWTPNVQYYS SKEFSRLGHA LHYNVQGTLA LPVFEPSRQL CVGVVELIMT 240 SPKINYAPEV EKVCKALEAV NLKTSEILNH ETTQICNEGR QNALAEILEI LTVVCETYKL 300 PLAQTWVPCR HRSVLAFGGG FKKSCSSFDG SCMGKVCMST SDLAVYVVDA HVWGFRDACA 360 EHHLQKGQGV AGRAFQSGNL CFCRDVTRFC KTDYPLVHYA RMFKLTSCFA VCLKSTYTGD 420 DEYVLEFFLP PAITDKSEQD CLLGSLLQTM KQHYSSLKVV SETELCENNM SLEVVEASED 480 GMVYSKLEPI RIHHPAQISK DYLELNAPEQ KVSLNSDFME NNEVDDGVER FQTLDPIPEA 540 KTVKKSERKR GKTEKTISLE VLQQYFAGSL KDAAKSLGVC PTTMKRICRQ HGISRWPSRK 600 INKVNRSLTR LKHVIDSVQG ADGSLNLTSL SPRPWPHQIP PIDIQLAKNC PPTSTSPLSN 660 LQDVKIENRD AEDSAGSSTS RASCKVNPIC ETRFRLPTHN QEPSRQVALD DSDSSSKNMT 720 NFWAHLTCQD TASPTILQHK LVSIKATYRE DIIRFKISPE SVSITELKQQ VAKRLKLETA 780 AFELKYLDDD REWVSVSCDA DLSECLDTSA AKANTLRLSV HDVTFNFGSS CESSEETMMC 840 L
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Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor. {ECO:0000250}. |
Function -- GeneRIF ? help
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- TCP20 and NLP6/NLP7 transcription factors control plant responses to nitrate availability.
[PMID: 28202720]
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Phenotype -- Disruption Phenotype ? help
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Source |
Description |
UniProt | DISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:18826430}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT000933 | 0.0 | BT000933.1 Arabidopsis thaliana clone C104874 unknown protein (At1g64530) mRNA, complete cds. |
Publications
? help Back to Top |
- Riechmann JL, et al.
Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Science, 2000. 290(5499): p. 2105-10 [PMID:11118137] - Yamada K, et al.
Empirical analysis of transcriptional activity in the Arabidopsis genome. Science, 2003. 302(5646): p. 842-6 [PMID:14593172] - Schauser L,Wieloch W,Stougaard J
Evolution of NIN-like proteins in Arabidopsis, rice, and Lotus japonicus. J. Mol. Evol., 2005. 60(2): p. 229-37 [PMID:15785851] - Castaings L, et al.
The nodule inception-like protein 7 modulates nitrate sensing and metabolism in Arabidopsis. Plant J., 2009. 57(3): p. 426-35 [PMID:18826430] - Arabidopsis Interactome Mapping Consortium
Evidence for network evolution in an Arabidopsis interactome map. Science, 2011. 333(6042): p. 601-7 [PMID:21798944] - Konishi M,Yanagisawa S
Arabidopsis NIN-like transcription factors have a central role in nitrate signalling. Nat Commun, 2013. 4: p. 1617 [PMID:23511481] - Liseron-Monfils C, et al.
Nitrogen transporter and assimilation genes exhibit developmental stage-selective expression in maize (Zea mays L.) associated with distinct cis-acting promoter motifs. Plant Signal Behav, 2014. [PMID:24270626] - Guan P, et al.
Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] - Guan P
Dancing with Hormones: A Current Perspective of Nitrate Signaling and Regulation in Arabidopsis. Front Plant Sci, 2017. 8: p. 1697 [PMID:29033968]
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