PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT1G61660.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | bHLH | ||||||||
Protein Properties | Length: 371aa MW: 40502.3 Da PI: 6.0906 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 13.8 | 0.0001 | 277 | 297 | 34 | 54 |
TTS-STCHHHHHHHHHHHHHH CS HLH 34 pskKlsKaeiLekAveYIksL 54 p K + a++L++A+eYIk L AT1G61660.4 277 PTFKTDTASVLQEAIEYIKFL 297 666999*************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 8.81 | 244 | 297 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.3E-6 | 277 | 305 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.57E-6 | 277 | 314 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 9.81E-4 | 280 | 301 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0042631 | Biological Process | cellular response to water deprivation | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0071215 | Biological Process | cellular response to abscisic acid stimulus | ||||
GO:0071472 | Biological Process | cellular response to salt stress | ||||
GO:2000214 | Biological Process | regulation of proline metabolic process | ||||
GO:2000377 | Biological Process | regulation of reactive oxygen species metabolic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding | ||||
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000013 | anatomy | cauline leaf | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0000230 | anatomy | inflorescence meristem | ||||
PO:0000293 | anatomy | guard cell | ||||
PO:0008019 | anatomy | leaf lamina base | ||||
PO:0009005 | anatomy | root | ||||
PO:0009006 | anatomy | shoot system | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009010 | anatomy | seed | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009029 | anatomy | stamen | ||||
PO:0009030 | anatomy | carpel | ||||
PO:0009031 | anatomy | sepal | ||||
PO:0009032 | anatomy | petal | ||||
PO:0009046 | anatomy | flower | ||||
PO:0009047 | anatomy | stem | ||||
PO:0009052 | anatomy | flower pedicel | ||||
PO:0020030 | anatomy | cotyledon | ||||
PO:0020038 | anatomy | petiole | ||||
PO:0020100 | anatomy | hypocotyl | ||||
PO:0020137 | anatomy | leaf apex | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0025281 | anatomy | pollen | ||||
PO:0001054 | developmental stage | vascular leaf senescent stage | ||||
PO:0001078 | developmental stage | plant embryo cotyledonary stage | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0001185 | developmental stage | plant embryo globular stage | ||||
PO:0004507 | developmental stage | plant embryo bilateral stage | ||||
PO:0007064 | developmental stage | LP.12 twelve leaves visible stage | ||||
PO:0007095 | developmental stage | LP.08 eight leaves visible stage | ||||
PO:0007098 | developmental stage | LP.02 two leaves visible stage | ||||
PO:0007103 | developmental stage | LP.10 ten leaves visible stage | ||||
PO:0007115 | developmental stage | LP.04 four leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage | ||||
PO:0007616 | developmental stage | flowering stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 371 aa Download sequence Send to blast |
MAEEFKATAS ICGGGGGAWW NSPRSVMSPS DHFLSPCFGA AITSNDFSSQ ENHLKSRMTC 60 TDNNNIVFGQ READSDSGGS TVTMDSTLQM MGLGFSSNCS SDWNQTILQE DLNSSFIRSS 120 QDQDHGQGFL STTTSPYILN PACSSSPSTS SSSSLIRTFY DPEPSPYNFV STTSGSINDP 180 QLSWANKTNP HHQVAYGLIN SFSNNANSRP FWNSSSTTNL NNTTPSNFVT TPQIISTRLE 240 DKTKNLKTRA QSESLKRAKD NESAAKKPRV TTPSPLPTFK TDTASVLQEA IEYIKFLHDQ 300 VTVLSTPYMK QGASNQQQQQ ISGKSKSQDE NENHELRGHG LCLVPISSTF PVANETTADF 360 WTPTFGGNNF R |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.22850 | 0.0 | root |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
Genevisible | 265034_at | 1e-143 | ||||
Expression Atlas | AT1G61660 | - | ||||
AtGenExpress | AT1G61660 | - | ||||
ATTED-II | AT1G61660 | - |
Function -- GeneRIF ? help Back to Top | ||||||
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT1G61660.4 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT1G61660 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF380649 | 0.0 | AF380649.1 Arabidopsis thaliana At1g61660/T13M11_21 mRNA, complete cds. | |||
GenBank | AY113072 | 0.0 | AY113072.1 Arabidopsis thaliana At1g61660/T13M11_21 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001185285.1 | 0.0 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | ||||
Swissprot | Q94JL3 | 0.0 | BH112_ARATH; Transcription factor bHLH112 | ||||
TrEMBL | F4HVE0 | 0.0 | F4HVE0_ARATH; Basic helix-loop-helix (BHLH) DNA-binding superfamily protein | ||||
STRING | AT1G61660.1 | 0.0 | (Arabidopsis thaliana) |
Link Out ? help Back to Top | |
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Phytozome | AT1G61660.4 |
Entrez Gene | 842462 |
iHOP | AT1G61660 |
wikigenes | AT1G61660 |