 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
AT1G60380.1 |
| Common Name | T13D8.25 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
|
| Family |
NAC |
| Protein Properties |
Length: 318aa MW: 37404.4 Da PI: 9.0656 |
| Description |
NAC family protein |
| Gene Model |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 28.7 | 3.8e-09 | 9 | 121 | 10 | 128 |
NAM 10 tdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekew.yfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkkt 105
+de ++++yLk+ + ++ + +i+++d+++ +P + + e+ f + + +++a gk +sg W+ g+dk ++s+ +g+ g kk+
AT1G60380.1 9 EDEVIISRYLKPMIVNRVSWPDLFIEDADVFNKDPYVK---F--H-AEIpSFVIVKPRTKACGKTDG--CDSGCWRIIGRDKLIKSEeTGKILGFKKI 98
588899*******99998555457***********643...2..2.233245555555555554444..479*************98778889***** PP
NAM 106 LvfykgrapkgektdWvmheyrl 128
L f + +p+ k + vm+eyrl
AT1G60380.1 99 LKFCLKWKPREYKRSLVMEEYRL 121
******9**************98 PP
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| 2 | NAM | 33.6 | 1.1e-10 | 200 | 293 | 37 | 128 |
NAM 37 vdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfy......k.grapkgektdWvmhe 125
++y ++P++L + k +++ + F++r + + ++gyWk + ++k ++s+ g+++g kk++ fy + g + + +k +W+++e
AT1G60380.1 200 NNVYCLHPSELVNvhDGKFHDNGICIFANRTCGV-----TDK-CNEGYWKIKHREKLIMSRYGQTIGWKKVFQFYetekerHfG-NGEEVKVTWTLKE 290
4789999999973223334677888888775543.....334.578*****************************443322112.233469******* PP
NAM 126 yrl 128
yrl
AT1G60380.1 291 YRL 293
*98 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 318 aa
Download sequence Send
to blast |
MADTLLNAED EVIISRYLKP MIVNRVSWPD LFIEDADVFN KDPYVKFHAE IPSFVIVKPR 60
TKACGKTDGC DSGCWRIIGR DKLIKSEETG KILGFKKILK FCLKWKPREY KRSLVMEEYR 120
LTNNFNWKQD HVICKIRLLF EAEISFLLAK HFYTTSDSLP RNVLLPAYGF CSPDKQEEDE 180
FYPVTIMISE GKDWPSYVTN NVYCLHPSEL VNVHDGKFHD NGICIFANRT CGVTDKCNEG 240
YWKIKHREKL IMSRYGQTIG WKKVFQFYET EKERHFGNGE EVKVTWTLKE YRLTRKMNKN 300
KVVCVIKYKV KCLPRITS
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
| GenBank | DQ056501 | 0.0 | DQ056501.1 Arabidopsis thaliana apical meristem formation protein-related (At1g60380) mRNA, complete cds. |
| GenBank | T13D8 | 0.0 | AC004473.1 Arabidopsis thaliana chromosome 1 BAC T13D8, complete sequence. |
