PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT1G60300.1 | ||||||||
Common Name | T13D8.18 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | NAC | ||||||||
Protein Properties | Length: 322aa MW: 37851.2 Da PI: 5.3375 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 41.9 | 3.2e-13 | 19 | 131 | 10 | 128 |
NAM 10 tdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktL 106 +de ++++yLk v + + +++i+++++++ +P + ++e+ f + + +++a gk +sg W+ g+dk ++s+ +g+ g kk+L AT1G60300.1 19 EDEVIISRYLKGMVVNGDSWPDHFIEDANVFTKNPDKVF----NSERP-RFVIVKPRTEACGKTDG--CDSGCWRIIGRDKLIKSEeTGKILGFKKIL 109 588899*******98888666688**************5....23344.45555556666665444..479*************98778889****** PP NAM 107 vfykgrapkgektdWvmheyrl 128 f +r+p k +Wvm+eyrl AT1G60300.1 110 KFCLKRKPIDYKRSWVMEEYRL 131 ********************98 PP | |||||||
2 | NAM | 25.4 | 4e-08 | 191 | 303 | 17 | 128 |
NAM 17 eyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfy.. 109 +yL + ++++ +e + ++y ++P +L ++ ++ + F+++ t ++ + + gyWk dk ++s+ g+++g kk++ fy AT1G60300.1 191 FYLDAIMTSEGNEW-PSYVTNNVYCLHPLELV-DLQDrmfNDYGTCIFANK-----TCGETDK-CDGGYWKILHGDKLIKSNFGKVIGFKKVFEFYet 280 46666666666555.33556689999999996.332211123334444443.....3334555.478*****************************55 PP NAM 110 ....kgrapkgektdWvmheyrl 128 + + + +W+++eyrl AT1G60300.1 281 vrqiYLCDGEEVTVTWTIQEYRL 303 443312334556899******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 25.322 | 10 | 149 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.5E-8 | 19 | 131 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 4.97E-27 | 19 | 148 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 7.72E-28 | 159 | 318 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 18.984 | 174 | 319 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.7E-5 | 180 | 303 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 322 aa Download sequence Send to blast |
MEDDDAAYDL IKHELLYSED EVIISRYLKG MVVNGDSWPD HFIEDANVFT KNPDKVFNSE 60 RPRFVIVKPR TEACGKTDGC DSGCWRIIGR DKLIKSEETG KILGFKKILK FCLKRKPIDY 120 KRSWVMEEYR LTNNLNWKQD HVICKIRFMF EAEISFLLSK HFYTTSESVL ENELLPSYGY 180 YLSNTQEEDE FYLDAIMTSE GNEWPSYVTN NVYCLHPLEL VDLQDRMFND YGTCIFANKT 240 CGETDKCDGG YWKILHGDKL IKSNFGKVIG FKKVFEFYET VRQIYLCDGE EVTVTWTIQE 300 YRLSKNVKQN KVLCVIKLTY DR |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 18406698 | 0.0 | ||||
Genevisible | 264273_s_at | 1e-167 | ||||
Expression Atlas | AT1G60300 | - | ||||
AtGenExpress | AT1G60300 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT1G60300.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT1G60300 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. | |||
GenBank | DQ056500 | 0.0 | DQ056500.1 Arabidopsis thaliana apical meristem formation protein-related (At1g60300) mRNA, complete cds. | |||
GenBank | T13D8 | 0.0 | AC004473.1 Arabidopsis thaliana chromosome 1 BAC T13D8, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_176235.1 | 0.0 | NAC (No Apical Meristem) domain transcriptional regulator superfamily protein | ||||
TrEMBL | O80752 | 0.0 | O80752_ARATH; Apical meristem formation protein-related | ||||
STRING | AT1G60300.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3704 | 14 | 59 |
Link Out ? help Back to Top | |
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Phytozome | AT1G60300.1 |
Entrez Gene | 842325 |
iHOP | AT1G60300 |
wikigenes | AT1G60300 |
Publications ? help Back to Top | |||
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