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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
AT1G60240.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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| Family |
NAC |
| Protein Properties |
Length: 175aa MW: 21318.9 Da PI: 10.3288 |
| Description |
NAC family protein |
| Gene Model |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 31 | 7.5e-10 | 11 | 141 | 11 | 128 |
NAM 11 deelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkk 104
+e +v +yLk +++ ++ +++++ d+y +Pw+L ++ + yfF++r+ ++ + + g W+ g+d+ ++s +g+ glkk
AT1G60240.1 11 EEAIVANYLKMMIDNVNVWPRHFLRSEDVYCKNPWTLFV-TRDpiiLHFGRYFFVNRSVNSG---LTD-GCEYGCWRIIGRDRVIKSVtTGKILGLKK 103
57899************877788**************62.11111133477****9987653...333.3578************9986677778888 PP
NAM 105 tLvfy..............kgrapkgektdWvmheyrl 128
+ f k++++ + W m+eyr+
AT1G60240.1 104 VYKFCetdrkpksvfkfleKEKRRVRDRRIWAMEEYRF 141
888875555555444444323444446889******96 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 175 aa
Download sequence Send
to blast |
MMKSRREQSI EEAIVANYLK MMIDNVNVWP RHFLRSEDVY CKNPWTLFVT RDPIILHFGR 60
YFFVNRSVNS GLTDGCEYGC WRIIGRDRVI KSVTTGKILG LKKVYKFCET DRKPKSVFKF 120
LEKEKRRVRD RRIWAMEEYR FASTWKQDYV ICKIRRLYPQ PFDYMLAQHI RGYYK
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| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | BT025739 | 0.0 | BT025739.1 Arabidopsis thaliana At1g60240 mRNA, complete cds. |
| GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
| GenBank | T13D8 | 0.0 | AC004473.1 Arabidopsis thaliana chromosome 1 BAC T13D8, complete sequence. |
| Publications
? help Back to Top |
- Riechmann JL, et al.
Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
Science, 2000. 290(5499): p. 2105-10
[PMID:11118137] - Becker JD,Boavida LC,Carneiro J,Haury M,Feij
Transcriptional profiling of Arabidopsis tissues reveals the unique characteristics of the pollen transcriptome.
Plant Physiol., 2003. 133(2): p. 713-25
[PMID:14500793] - Nakano T, et al.
Identification of genes of the plant-specific transcription-factor families cooperatively regulated by ethylene and jasmonate in Arabidopsis thaliana.
J. Plant Res., 2006. 119(4): p. 407-13
[PMID:16820983] - Borges F, et al.
Comparative transcriptomics of Arabidopsis sperm cells.
Plant Physiol., 2008. 148(2): p. 1168-81
[PMID:18667720] - Wang Y, et al.
Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis.
Plant Physiol., 2008. 148(3): p. 1201-11
[PMID:18775970]
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