PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT1G59810.1
Common NameAGL50, F23H11.13
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family M-type_MADS
Protein Properties Length: 283aa    MW: 32174.2 Da    PI: 6.508
Description AGAMOUS-like 50
Gene Model
Gene Model ID Type Source Coding Sequence
AT1G59810.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF33.55.4e-1122621050
                 HHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
       SRF-TF 10 qvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                 q  f +R  g  KKA+ELSvLC+  v  i ++++  l+ ++
  AT1G59810.1 22 QSFFKQRFPGFKKKASELSVLCGNSVGFICYGPDSDLHVWP 62
                 344556778999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006610.751865IPR002100Transcription factor, MADS-box
CDDcd002668.24E-191890No hitNo description
PfamPF003194.3E-101861IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.4E-131997IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MAPRQKKPNK SDDDDDLRRK KQSFFKQRFP GFKKKASELS VLCGNSVGFI CYGPDSDLHV  60
WPQSQDHNPQ ALHEIVAKFN ALSDERRKNH ACDLNDFPHH LKGLSREELR KHLLHLDSQL  120
LGVREQKIEI LKKTLTGSSE KDGARVSENS AISDHKLKIE PHLKDILSED HLIRVSDKKL  180
GSCDVFDELA YVVRGSRNLN ENVSKYESKD ADNTGLDHLV TLGGDYLQEA AAELYQTYNL  240
GNFCDDHVWD LEFASRLPLL HTFSDPLMTT NTCQTMSTDM ISI
Expression -- Microarray ? help Back to Top
Source ID E-value
Genevisible263735_s_at0.0
Expression AtlasAT1G59810-
AtGenExpressAT1G59810-
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT1G59810.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT1G59810
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0072580.0AC007258.3 Arabidopsis thaliana chromosome I BAC F23H11 genomic sequence, complete sequence.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_176190.10.0AGAMOUS-like 50
SwissprotQ9ZUI90.0AGL49_ARATH; Agamous-like MADS-box protein AGL49
TrEMBLQ9XIE70.0Q9XIE7_ARATH; AGAMOUS-like 50
STRINGAT1G59810.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM11232928
Publications ? help Back to Top
  1. De Bodt S, et al.
    Genomewide structural annotation and evolutionary analysis of the type I MADS-box genes in plants.
    J. Mol. Evol., 2003. 56(5): p. 573-86
    [PMID:12698294]
  2. Parenicová L, et al.
    Molecular and phylogenetic analyses of the complete MADS-box transcription factor family in Arabidopsis: new openings to the MADS world.
    Plant Cell, 2003. 15(7): p. 1538-51
    [PMID:12837945]
  3. Kofuji R, et al.
    Evolution and divergence of the MADS-box gene family based on genome-wide expression analyses.
    Mol. Biol. Evol., 2003. 20(12): p. 1963-77
    [PMID:12949148]
  4. de Folter S, et al.
    Comprehensive interaction map of the Arabidopsis MADS Box transcription factors.
    Plant Cell, 2005. 17(5): p. 1424-33
    [PMID:15805477]
  5. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]