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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
AT1G54060.1 |
Common Name | ASIL1, F15I1.14 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family |
Trihelix |
Protein Properties |
Length: 383aa MW: 41731.6 Da PI: 9.064 |
Description |
6B-interacting protein 1-like 1 |
Gene Model |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 53.3 | 7.5e-17 | 93 | 179 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm...rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
+W+++ +++Liea ++ ++ ++g lk+++W+ev++ + r+ ++ ++ +qCk++++ ++k+yk++k+ ++ + s++++f++le
AT1G54060.1 93 CWSEEATKVLIEAWGDRFSEPGKGTLKQQHWKEVAEIVnksRQCKYPKTDIQCKNRIDTVKKKYKQEKAKIASG--DGPSKWVFFKKLE 179
7*************************************99999999**************************98..56668******98 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0009733 | Biological Process | response to auxin |
GO:0009793 | Biological Process | embryo development ending in seed dormancy |
GO:0010029 | Biological Process | regulation of seed germination |
GO:0010431 | Biological Process | seed maturation |
GO:0048831 | Biological Process | regulation of shoot system development |
GO:0005730 | Cellular Component | nucleolus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 383 aa
Download sequence Send
to blast |
MEDDDEIQSI PSPGDSSLSP QAPPSPPILP TNDVTVAVVK KPQPGLSSQS PSMNALALVV 60 HTPSVTGGGG SGNRNGRGGG GGSGGGGGGR DDCWSEEATK VLIEAWGDRF SEPGKGTLKQ 120 QHWKEVAEIV NKSRQCKYPK TDIQCKNRID TVKKKYKQEK AKIASGDGPS KWVFFKKLES 180 LIGGTTTFIA SSKASEKAPM GGALGNSRSS MFKRQTKGNQ IVQQQQEKRG SDSMRWHFRK 240 RSASETESES DPEPEASPEE SAESLPPLQP IQPLSFHMPK RLKVDKSGGG GSGVGDVARA 300 ILGFTEAYEK AETAKLKLMA ELEKERMKFA KEMELQRMQF LKTQLEITQN NQEEEERSRQ 360 RGERRIVDDD DDRNGKNNGN VSS
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Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 76 | 89 | RGGGGGSGGGGGGR |
2 | 227 | 240 | KRGSDSMRWHFRKR |
Expression --
Description ? help
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Source |
Description |
Uniprot | DEVELOPMENTAL STAGE: Induced by seed imbibition with a peak after 1 hour and then steadily decreases to be barely detectable at day 3. {ECO:0000269|PubMed:19155348}. |
Functional Description ? help
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Source |
Description |
TAIR | Member of the trihelix DNA binding protein family. Nuclear localized. Involved in repressing seed maturation genes during seed germination and seedling development. |
UniProt | Transcription repressor that binds specific DNA sequence such as the GT-box-like motif 5'-CGTGATT-3' in the AT2S3 promoter. Negative regulator of seed maturation genes during seed germination and seedling development. May target GT-box-containing embryonic genes by competing with the binding of transcriptional activators to this promoter region (PubMed:19155348). Contributes to the maintenance and control of seed filling (PubMed:22231199) and may repress the maturation program during early embryogenesis (PubMed:21330492). {ECO:0000269|PubMed:19155348, ECO:0000269|PubMed:21330492, ECO:0000269|PubMed:22231199}. |
Function -- GeneRIF ? help
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- ASIL1 is a regulator that represses the expression of embryonic seed maturation genes in vegetative tissues.
[PMID: 19155348] - ASIL1 acts as a temporal regulator of seed filling.
[PMID: 22231199]
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Phenotype -- Disruption Phenotype ? help
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Source |
Description |
UniProt | DISRUPTION PHENOTYPE: Reduced growth of leaves, petioles, stems and siliques. Delayed flowering. {ECO:0000269|PubMed:19155348}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AF360325 | 0.0 | AF360325.1 Arabidopsis thaliana unknown protein (At1g54060) mRNA, complete cds. |
GenBank | AY056333 | 0.0 | AY056333.1 Arabidopsis thaliana unknown protein (At1g54060) mRNA, complete cds. |
GenBank | AY084772 | 0.0 | AY084772.1 Arabidopsis thaliana clone 117519 mRNA, complete sequence. |
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
GenBank | F15I1 | 0.0 | AC006577.2 Sequence of BAC F15I1 from Arabidopsis thaliana chromosome 1, complete sequence. |
Publications
? help Back to Top |
- Riechmann JL, et al.
Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Science, 2000. 290(5499): p. 2105-10 [PMID:11118137] - Yamada K, et al.
Empirical analysis of transcriptional activity in the Arabidopsis genome. Science, 2003. 302(5646): p. 842-6 [PMID:14593172] - Pendle AF, et al.
Proteomic analysis of the Arabidopsis nucleolus suggests novel nucleolar functions. Mol. Biol. Cell, 2005. 16(1): p. 260-9 [PMID:15496452] - Gao MJ, et al.
Repression of seed maturation genes by a trihelix transcriptional repressor in Arabidopsis seedlings. Plant Cell, 2009. 21(1): p. 54-71 [PMID:19155348] - Reiland S, et al.
Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks. Plant Physiol., 2009. 150(2): p. 889-903 [PMID:19376835] - Willmann MR,Mehalick AJ,Packer RL,Jenik PD
MicroRNAs regulate the timing of embryo maturation in Arabidopsis. Plant Physiol., 2011. 155(4): p. 1871-84 [PMID:21330492] - Park HY, et al.
EMF1 interacts with EIP1, EIP6 or EIP9 involved in the regulation of flowering time in Arabidopsis. Plant Cell Physiol., 2011. 52(8): p. 1376-88 [PMID:21700722] - Arabidopsis Interactome Mapping Consortium
Evidence for network evolution in an Arabidopsis interactome map. Science, 2011. 333(6042): p. 601-7 [PMID:21798944] - Gaudinier A, et al.
Enhanced Y1H assays for Arabidopsis. Nat. Methods, 2011. 8(12): p. 1053-5 [PMID:22037706] - Gao MJ, et al.
ASIL1 is required for proper timing of seed filling in Arabidopsis. Plant Signal Behav, 2011. 6(12): p. 1886-8 [PMID:22231199] - Barr MS,Willmann MR,Jenik PD
Is there a role for trihelix transcription factors in embryo maturation? Plant Signal Behav, 2012. 7(2): p. 205-9 [PMID:22353863] - Li-Beisson Y, et al.
Acyl-lipid metabolism. Arabidopsis Book, 2013. 11: p. e0161 [PMID:23505340] - We
Convergent targeting of a common host protein-network by pathogen effectors from three kingdoms of life. Cell Host Microbe, 2014. 16(3): p. 364-75 [PMID:25211078] - Jin J, et al.
An Arabidopsis Transcriptional Regulatory Map Reveals Distinct Functional and Evolutionary Features of Novel Transcription Factors. Mol. Biol. Evol., 2015. 32(7): p. 1767-73 [PMID:25750178]
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