PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT1G52520.1 | ||||||||
Common Name | F6D8.26, FRS6 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | FAR1 | ||||||||
Protein Properties | Length: 703aa MW: 81603.7 Da PI: 7.0844 | ||||||||
Description | FAR1-related sequence 6 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 68.6 | 1.6e-21 | 99 | 182 | 1 | 89 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Yn YA+evGF+vr+++s ++r++e + + ++Cs +g+++ ++ + r r+etrtgC a++++++ ++++w+v ++ l+HnH l AT1G52520.1 99 NYYNCYASEVGFRVRVKNSWFKRRSKEKYGAVLCCSSQGFKRINDVN-----RVRKETRTGCPAMIRMRQVDSKRWRVVEVTLDHNHLL 182 69*****************************************9988.....999********************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 5.8E-19 | 99 | 182 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 1.4E-23 | 297 | 389 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.606 | 584 | 620 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 1.0E-4 | 592 | 616 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 1.1E-6 | 595 | 622 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009639 | Biological Process | response to red or far red light | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000013 | anatomy | cauline leaf | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0000084 | anatomy | plant sperm cell | ||||
PO:0000230 | anatomy | inflorescence meristem | ||||
PO:0000293 | anatomy | guard cell | ||||
PO:0008019 | anatomy | leaf lamina base | ||||
PO:0009005 | anatomy | root | ||||
PO:0009006 | anatomy | shoot system | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009010 | anatomy | seed | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009029 | anatomy | stamen | ||||
PO:0009030 | anatomy | carpel | ||||
PO:0009031 | anatomy | sepal | ||||
PO:0009032 | anatomy | petal | ||||
PO:0009046 | anatomy | flower | ||||
PO:0009047 | anatomy | stem | ||||
PO:0009052 | anatomy | flower pedicel | ||||
PO:0020030 | anatomy | cotyledon | ||||
PO:0020100 | anatomy | hypocotyl | ||||
PO:0020137 | anatomy | leaf apex | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0025281 | anatomy | pollen | ||||
PO:0001054 | developmental stage | vascular leaf senescent stage | ||||
PO:0001078 | developmental stage | plant embryo cotyledonary stage | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0001185 | developmental stage | plant embryo globular stage | ||||
PO:0004507 | developmental stage | plant embryo bilateral stage | ||||
PO:0007064 | developmental stage | LP.12 twelve leaves visible stage | ||||
PO:0007098 | developmental stage | LP.02 two leaves visible stage | ||||
PO:0007103 | developmental stage | LP.10 ten leaves visible stage | ||||
PO:0007115 | developmental stage | LP.04 four leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage | ||||
PO:0007616 | developmental stage | flowering stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 703 aa Download sequence Send to blast |
MERSESVDED VQASAYLEND EVRERDDPMS DTLRIGEEAL VCSSEHEIDV GFCQNEERKS 60 EEETMGGFDE QSGLLVDERK EFDAPAVGME FESYDDAYNY YNCYASEVGF RVRVKNSWFK 120 RRSKEKYGAV LCCSSQGFKR INDVNRVRKE TRTGCPAMIR MRQVDSKRWR VVEVTLDHNH 180 LLGCKLYKSV KRKRKCVSSP VSDAKTIKLY RACVVDNGSN VNPNSTLNKK FQNSTGSPDL 240 LNLKRGDSAA IYNYFCRMQL TNPNFFYLMD VNDEGQLRNV FWADAFSKVS CSYFGDVIFI 300 DSSYISGKFE IPLVTFTGVN HHGKTTLLSC GFLAGETMES YHWLLKVWLS VMKRSPQTIV 360 TDRCKPLEAA ISQVFPRSHQ RFSLTHIMRK IPEKLGGLHN YDAVRKAFTK AVYETLKVVE 420 FEAAWGFMVH NFGVIENEWL RSLYEERAKW APVYLKDTFF AGIAAAHPGE TLKPFFERYV 480 HKQTPLKEFL DKYELALQKK HREETLSDIE SQTLNTAELK TKCSFETQLS RIYTRDMFKK 540 FQIEVEEMYS CFSTTQVHVD GPFVIFLVKE RVRGESSRRE IRDFEVLYNR SVGEVRCICS 600 CFNFYGYLCR HALCVLNFNG VEEIPLRYIL PRWRKDYKRL HFADNGLTGF VDGTDRVQWF 660 DQLYKNSLQV VEEGAVSLDH YKVAMQVLQE SLDKVHSVEE KQD |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.37583 | 0.0 | flower |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
Genevisible | 262150_at | 0.0 | ||||
Expression Atlas | AT1G52520 | - | ||||
AtGenExpress | AT1G52520 | - | ||||
ATTED-II | AT1G52520 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269|PubMed:15591448}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT1G52520.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT1G52520 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY080775 | 0.0 | AY080775.1 Arabidopsis thaliana unknown protein (At1g52520) mRNA, complete cds. | |||
GenBank | AY133776 | 0.0 | AY133776.1 Arabidopsis thaliana clone U10495 unknown protein (At1g52520) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_175661.1 | 0.0 | FAR1-related sequence 6 | ||||
Swissprot | Q9SSQ4 | 0.0 | FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6 | ||||
TrEMBL | A0A178WP94 | 0.0 | A0A178WP94_ARATH; FRS6 | ||||
STRING | AT1G52520.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10788 | 25 | 31 |
Representative plant | OGRP30 | 12 | 351 |
Link Out ? help Back to Top | |
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Phytozome | AT1G52520.1 |
Entrez Gene | 841683 |
iHOP | AT1G52520 |
wikigenes | AT1G52520 |
Publications ? help Back to Top | |||
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