PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT1G51600.1
Common NameF19C24.17, F5D21.22, GATA28, TIFY2A, ZML2
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family GATA
Protein Properties Length: 302aa    MW: 33129.8 Da    PI: 7.1895
Description ZIM-LIKE 2
Gene Model
Gene Model ID Type Source Coding Sequence
AT1G51600.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA473.6e-15223258134
         GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 
                  C++Cg  +  Tp++Rrgp g++tLCnaCGl+++ kg
  AT1G51600.1 223 CRHCGIGEksTPMMRRGPAGPRTLCNACGLMWANKG 258
                  ****865556**********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132014.51377112IPR010399Tify domain
SMARTSM009797.6E-1177112IPR010399Tify domain
PfamPF062003.0E-1179111IPR010399Tify domain
PfamPF062032.1E-15147189IPR010402CCT domain
PROSITE profilePS5101712.987147189IPR010402CCT domain
SMARTSM004011.8E-11217270IPR000679Zinc finger, GATA-type
PROSITE profilePS501148.721217273IPR000679Zinc finger, GATA-type
SuperFamilySSF577168.08E-13218281No hitNo description
Gene3DG3DSA:3.30.50.109.1E-15221264IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.56E-14222265No hitNo description
PfamPF003205.5E-13223258IPR000679Zinc finger, GATA-type
PROSITE patternPS003440223250IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000013anatomycauline leaf
PO:0000037anatomyshoot apex
PO:0000084anatomyplant sperm cell
PO:0000230anatomyinflorescence meristem
PO:0000293anatomyguard cell
PO:0008019anatomyleaf lamina base
PO:0009005anatomyroot
PO:0009006anatomyshoot system
PO:0009009anatomyplant embryo
PO:0009010anatomyseed
PO:0009025anatomyvascular leaf
PO:0009029anatomystamen
PO:0009030anatomycarpel
PO:0009031anatomysepal
PO:0009032anatomypetal
PO:0009046anatomyflower
PO:0009047anatomystem
PO:0009052anatomyflower pedicel
PO:0020030anatomycotyledon
PO:0020038anatomypetiole
PO:0020100anatomyhypocotyl
PO:0020137anatomyleaf apex
PO:0025022anatomycollective leaf structure
PO:0025195anatomypollen tube cell
PO:0025281anatomypollen
PO:0001017developmental stageM germinated pollen stage
PO:0001054developmental stagevascular leaf senescent stage
PO:0001078developmental stageplant embryo cotyledonary stage
PO:0001081developmental stagemature plant embryo stage
PO:0001185developmental stageplant embryo globular stage
PO:0004507developmental stageplant embryo bilateral stage
PO:0007064developmental stageLP.12 twelve leaves visible stage
PO:0007095developmental stageLP.08 eight leaves visible stage
PO:0007098developmental stageLP.02 two leaves visible stage
PO:0007103developmental stageLP.10 ten leaves visible stage
PO:0007115developmental stageLP.04 four leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MDDLHGSNAR MHIREAQDPM HVQFEHHALH HIHNGSGMVD DQADDGNAGG MSEGVETDIP  60
SHPGNVTDNR GEVVDRGSEQ GDQLTLSFQG QVYVFDSVLP EKVQAVLLLL GGRELPQAAP  120
PGLGSPHQNN RVSSLPGTPQ RFSIPQRLAS LVRFREKRKG RNFDKKIRYT VRKEVALRMQ  180
RNKGQFTSAK SNNDEAASAG SSWGSNQTWA IESSEAQHQE ISCRHCGIGE KSTPMMRRGP  240
AGPRTLCNAC GLMWANKGAF RDLSKASPQT AQNLPLNKNE DANLETDHQI MITVANDISN  300
SQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.261800.0flower| root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1453366270.0
Genevisible260488_at0.0
Expression AtlasAT1G51600-
AtGenExpressAT1G51600-
ATTED-IIAT1G51600-
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:14966217}.
Functional Description ? help Back to Top
Source Description
TAIRmember of a novel family of plant-specific GATA-type transcription factors.
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Function -- GeneRIF ? help Back to Top
  1. The ZML2 and ZML1 GATA transcription factors are two essential components of the cry1-mediated photoprotective response.
    [PMID: 22786870]
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00198DAP27203113Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT1G51600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Interaction ? help Back to Top
Source Intact With
IntActSearch Q8H1G0
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT1G51600
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1190610.0AB119061.1 Arabidopsis thaliana ZML2 mRNA for GATA-type zinc finger protein, complete cds.
GenBankAY1503950.0AY150395.1 Arabidopsis thaliana putative flowering protein CONSTANS (At1g51600) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_564593.10.0ZIM-LIKE 2
RefseqNP_974002.10.0ZIM-LIKE 2
SwissprotQ8H1G00.0GAT28_ARATH; GATA transcription factor 28
TrEMBLA0A178WGN10.0A0A178WGN1_ARATH; ZML2
STRINGAT1G51600.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36842659
Representative plantOGRP8311661
Publications ? help Back to Top
  1. Yamada K, et al.
    Empirical analysis of transcriptional activity in the Arabidopsis genome.
    Science, 2003. 302(5646): p. 842-6
    [PMID:14593172]
  2. Shikata M,Takemura M,Yokota A,Kohchi T
    Arabidopsis ZIM, a plant-specific GATA factor, can function as a transcriptional activator.
    Biosci. Biotechnol. Biochem., 2003. 67(11): p. 2495-7
    [PMID:14646219]
  3. Shikata M, et al.
    Characterization of Arabidopsis ZIM, a member of a novel plant-specific GATA factor gene family.
    J. Exp. Bot., 2004. 55(397): p. 631-9
    [PMID:14966217]
  4. Reyes JC,Muro-Pastor MI,Florencio FJ
    The GATA family of transcription factors in Arabidopsis and rice.
    Plant Physiol., 2004. 134(4): p. 1718-32
    [PMID:15084732]
  5. Manfield IW,Devlin PF,Jen CH,Westhead DR,Gilmartin PM
    Conservation, convergence, and divergence of light-responsive, circadian-regulated, and tissue-specific expression patterns during evolution of the Arabidopsis GATA gene family.
    Plant Physiol., 2007. 143(2): p. 941-58
    [PMID:17208962]
  6. Vanholme B,Grunewald W,Bateman A,Kohchi T,Gheysen G
    The tify family previously known as ZIM.
    Trends Plant Sci., 2007. 12(6): p. 239-44
    [PMID:17499004]
  7. Wang Y, et al.
    Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis.
    Plant Physiol., 2008. 148(3): p. 1201-11
    [PMID:18775970]
  8. Arabidopsis Interactome Mapping Consortium
    Evidence for network evolution in an Arabidopsis interactome map.
    Science, 2011. 333(6042): p. 601-7
    [PMID:21798944]
  9. Shaikhali J, et al.
    The CRYPTOCHROME1-dependent response to excess light is mediated through the transcriptional activators ZINC FINGER PROTEIN EXPRESSED IN INFLORESCENCE MERISTEM LIKE1 and ZML2 in Arabidopsis.
    Plant Cell, 2012. 24(7): p. 3009-25
    [PMID:22786870]