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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
AT1G46408.1 |
| Common Name | AGL97, F2G19.10 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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| Family |
M-type_MADS |
| Protein Properties |
Length: 266aa MW: 29852.8 Da PI: 3.9564 |
| Description |
AGAMOUS-like 97 |
| Gene Model |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 45.5 | 9.7e-15 | 12 | 49 | 2 | 39 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEE CS
SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevavii 39
+i+nk r v+fskRr+g+ KA+EL+ L dae+a+i
AT1G46408.1 12 KIQNKNPRAVSFSKRRKGLYSKASELCLLSDAEIAIIA 49
79**********************************96 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0005515 | Molecular Function | protein binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 266 aa
Download sequence Send
to blast |
MGGVKRKIAI EKIQNKNPRA VSFSKRRKGL YSKASELCLL SDAEIAIIAT PVSSNSNAAF 60
YSFGHSSVDN VVAAFLANQR PCDERFWWED ESLLKSENLE ELREAMDSMS TMLRDLKELE 120
KQRDHQTQTL IHQPCSARVC IQDYVTVNFD GFNTEEQTLA VSDNSNNNGL LGNLDECNED 180
FDDLDQIFDT VTNSEFLSVN LEMDDVTVNS EGNTEEQTLA VSDNSNNNGL LGNLDECNED 240
FDDLDQIIEY LTSSEALSMN LKMDDV
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Putative transcription factor. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC083835 | 0.0 | AC083835.5 Arabidopsis thaliana chromosome 1 BAC F2G19 genomic sequence, complete sequence. |
| GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
| Publications
? help Back to Top |
- Riechmann JL, et al.
Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
Science, 2000. 290(5499): p. 2105-10
[PMID:11118137] - Parenicová L, et al.
Molecular and phylogenetic analyses of the complete MADS-box transcription factor family in Arabidopsis: new openings to the MADS world.
Plant Cell, 2003. 15(7): p. 1538-51
[PMID:12837945] - Boisson B,Giglione C,Meinnel T
Unexpected protein families including cell defense components feature in the N-myristoylome of a higher eukaryote.
J. Biol. Chem., 2003. 278(44): p. 43418-29
[PMID:12912986] - Kofuji R, et al.
Evolution and divergence of the MADS-box gene family based on genome-wide expression analyses.
Mol. Biol. Evol., 2003. 20(12): p. 1963-77
[PMID:12949148] - De Bodt S,Raes J,Van de Peer Y,Theissen G
And then there were many: MADS goes genomic.
Trends Plant Sci., 2003. 8(10): p. 475-83
[PMID:14557044] - de Folter S, et al.
Comprehensive interaction map of the Arabidopsis MADS Box transcription factors.
Plant Cell, 2005. 17(5): p. 1424-33
[PMID:15805477] - Zhang S, et al.
FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
Plant Physiol., 2018. 177(1): p. 285-299
[PMID:29523711]
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