PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT1G44830.1 | ||||||||
Common Name | ERF014, T12C22.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | ERF | ||||||||
Protein Properties | Length: 211aa MW: 23039.4 Da PI: 5.2437 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.3 | 1.9e-18 | 33 | 83 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ykGVr ++ +g+Wv+eIr p ++++r++lg++ tae Aa+a++aa ++l+g AT1G44830.1 33 KKYKGVRMRS-WGSWVSEIRAP---NQKTRIWLGSYSTAEAAARAYDAALLCLKG 83 59*****998.**********9...336************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.08E-17 | 33 | 93 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 5.5E-29 | 34 | 93 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.7E-11 | 34 | 83 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.0E-32 | 34 | 98 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.759 | 34 | 92 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.99E-18 | 34 | 92 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 4.7E-9 | 35 | 46 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.7E-9 | 57 | 73 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009861 | Biological Process | jasmonic acid and ethylene-dependent systemic resistance | ||||
GO:0009863 | Biological Process | salicylic acid mediated signaling pathway | ||||
GO:0009873 | Biological Process | ethylene-activated signaling pathway | ||||
GO:0045088 | Biological Process | regulation of innate immune response | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:1900030 | Biological Process | regulation of pectin biosynthetic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000013 | anatomy | cauline leaf | ||||
PO:0000026 | anatomy | primary root tip | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0000230 | anatomy | inflorescence meristem | ||||
PO:0003015 | anatomy | primary root differentiation zone | ||||
PO:0003022 | anatomy | lateral root cap of primary root | ||||
PO:0005679 | anatomy | epidermis | ||||
PO:0008019 | anatomy | leaf lamina base | ||||
PO:0009005 | anatomy | root | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009010 | anatomy | seed | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009031 | anatomy | sepal | ||||
PO:0009032 | anatomy | petal | ||||
PO:0009046 | anatomy | flower | ||||
PO:0009052 | anatomy | flower pedicel | ||||
PO:0020038 | anatomy | petiole | ||||
PO:0020100 | anatomy | hypocotyl | ||||
PO:0020137 | anatomy | leaf apex | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0025257 | anatomy | primary root elongation zone | ||||
PO:0001054 | developmental stage | vascular leaf senescent stage | ||||
PO:0001078 | developmental stage | plant embryo cotyledonary stage | ||||
PO:0004507 | developmental stage | plant embryo bilateral stage | ||||
PO:0007064 | developmental stage | LP.12 twelve leaves visible stage | ||||
PO:0007098 | developmental stage | LP.02 two leaves visible stage | ||||
PO:0007103 | developmental stage | LP.10 ten leaves visible stage | ||||
PO:0007115 | developmental stage | LP.04 four leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage | ||||
PO:0007616 | developmental stage | flowering stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MVKTLQKTPK RMSSPSSSSS SSSSTSSSSI RMKKYKGVRM RSWGSWVSEI RAPNQKTRIW 60 LGSYSTAEAA ARAYDAALLC LKGSSANNLN FPEISTSLYH IINNGDNNND MSPKSIQRVA 120 AAAAAANTDP SSSSVSTSSP LLSSPSEDLY DVVSMSQYDQ QVSLSESSSW YNCFDGDDQF 180 MFINGVSAPY LTTSLSDDFF EEGDIRLWNF C |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 6e-13 | 34 | 93 | 14 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 145336462 | 0.0 | ||||
Genevisible | 261327_at | 0.0 | ||||
Expression Atlas | AT1G44830 | - | ||||
AtGenExpress | AT1G44830 | - | ||||
ATTED-II | AT1G44830 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
TAIR | encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10. | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Function -- GeneRIF ? help Back to Top | ||||||
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Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00185 | DAP | 27203113 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT1G44830.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT1G44830 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY560839 | 0.0 | AY560839.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At1g44830) mRNA, complete cds. | |||
GenBank | BT025270 | 0.0 | BT025270.1 Arabidopsis thaliana At1g44830 mRNA, complete cds. | |||
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. | |||
GenBank | T12C22 | 0.0 | AC020576.2 Sequence of BAC T12C22 from Arabidopsis thaliana chromosome 1, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_175104.1 | 1e-152 | Integrase-type DNA-binding superfamily protein | ||||
Swissprot | Q9LPE8 | 1e-153 | ERF14_ARATH; Ethylene-responsive transcription factor ERF014 | ||||
TrEMBL | A0A178WK18 | 1e-151 | A0A178WK18_ARATH; Uncharacterized protein | ||||
STRING | AT1G44830.1 | 1e-152 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14409 | 18 | 22 | Representative plant | OGRP6 | 16 | 1718 |
Link Out ? help Back to Top | |
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Phytozome | AT1G44830.1 |
Entrez Gene | 841047 |
iHOP | AT1G44830 |
wikigenes | AT1G44830 |