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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
AT1G43950.1 |
| Common Name | ARF23, F9C16.11 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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| Family |
B3 |
| Protein Properties |
Length: 222aa MW: 24821.2 Da PI: 4.8279 |
| Description |
auxin response factor 23 |
| Gene Model |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | B3 | 56.4 | 5.5e-18 | 126 | 222 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93
f kvlt sd++++g +++p k+a e+ ++++ ++l+ d++g++W++k++yr +g t+GW+ F +++L +gD++vF + +++el+
AT1G43950.1 126 FTKVLTASDTSAQGEFSVPCKHAIEClppldMSQPIPAQELIAIDLHGNQWRFKHSYRVPRGD---TTGWNAFTTSKKLVVGDVIVFA--RGETGELR 218
89****************************9444445569*****************999999...78********************..4499999* PP
EEEE CS
B3 94 vkvf 97
v+++
AT1G43950.1 219 VGIR 222
9986 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009734 | Biological Process | auxin-activated signaling pathway |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 222 aa
Download sequence Send
to blast |
MESGNVVNVQ SELSGIIDGS KSYMYEQLWK LCAGPLCDIP KLGEKVYYFP QGHIELVEAS 60
TREELNELQP NCDLPSKLQC RVIAIHLKVE NNSDETYVEI TLMPDTTQVV IPTENENQFR 120
PIVNSFTKVL TASDTSAQGE FSVPCKHAIE CLPPLDMSQP IPAQELIAID LHGNQWRFKH 180
SYRVPRGDTT GWNAFTTSKK LVVGDVIVFA RGETGELRVG IR
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Auxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AB493494 | 0.0 | AB493494.1 Arabidopsis thaliana At1g34310 mRNA for hypothetical protein, partial cds, clone: RAAt1g34310. |
| GenBank | AY669792 | 0.0 | AY669792.1 Arabidopsis thaliana clone C105347 ARF12 (At1g34310) mRNA, complete cds. |
| Publications
? help Back to Top |
- Riechmann JL, et al.
Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
Science, 2000. 290(5499): p. 2105-10
[PMID:11118137] - Hagen G,Guilfoyle T
Auxin-responsive gene expression: genes, promoters and regulatory factors.
Plant Mol. Biol., 2002 Jun-Jul. 49(3-4): p. 373-85
[PMID:12036261] - Remington DL,Vision TJ,Guilfoyle TJ,Reed JW
Contrasting modes of diversification in the Aux/IAA and ARF gene families.
Plant Physiol., 2004. 135(3): p. 1738-52
[PMID:15247399] - Okushima Y, et al.
Functional genomic analysis of the AUXIN RESPONSE FACTOR gene family members in Arabidopsis thaliana: unique and overlapping functions of ARF7 and ARF19.
Plant Cell, 2005. 17(2): p. 444-63
[PMID:15659631] - Axtell MJ,Snyder JA,Bartel DP
Common functions for diverse small RNAs of land plants.
Plant Cell, 2007. 19(6): p. 1750-69
[PMID:17601824] - Swaminathan K,Peterson K,Jack T
The plant B3 superfamily.
Trends Plant Sci., 2008. 13(12): p. 647-55
[PMID:18986826]
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