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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
AT1G35240.1 |
| Common Name | ARF20, T9I1.3 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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| Family |
ARF |
| Protein Properties |
Length: 590aa MW: 66969.6 Da PI: 7.7075 |
| Description |
auxin response factor 20 |
| Gene Model |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | B3 | 72.6 | 4.9e-23 | 126 | 223 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94
f kvlt sd+++ g + +pkk+a e+ ++ ++l +d++g++W+++++yr++++r+ lt+GW+eF +++L gD++vF + +++el+v
AT1G35240.1 126 FTKVLTASDTSAYGGFFVPKKHAIEClpplPLP---AQELLAKDLHGNQWRFRHSYRGTPQRHSLTTGWNEFTTSKKLVKGDVIVFV--RGETGELRV 218
89************************9965444...348************************************************..449999*** PP
EEE-S CS
B3 95 kvfrk 99
+++r+
AT1G35240.1 219 GIRRA 223
***97 PP
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| 2 | Auxin_resp | 103.2 | 3.3e-34 | 248 | 329 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83
a ha++++++F vvY+P+ +s+F+v+++k+++a+++k++vG+Rf m+fe++d+serr+ Gt++gv+d++p +W+ S+WrsL+
AT1G35240.1 248 AKHALDNQCIFIVVYKPSIRSSQFIVSYDKFLDAMNNKFIVGSRFTMRFEGDDFSERRYFGTIIGVNDFSP-HWKCSEWRSLE 329
689********************************************************************.*********96 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009734 | Biological Process | auxin-activated signaling pathway |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0005515 | Molecular Function | protein binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 590 aa
Download sequence Send
to blast |
METGNVVNAQ PELSGIIDGS KSYMYEQLWK LCAGPLCDIP KLGENVYYFP QGNIELVDAS 60
TREELNELQP ICDLPSKLQC RVIAIHLKVE NNSDETYAEI TLMPDTTQVV IPTQSENQFR 120
PLVNSFTKVL TASDTSAYGG FFVPKKHAIE CLPPLPLPAQ ELLAKDLHGN QWRFRHSYRG 180
TPQRHSLTTG WNEFTTSKKL VKGDVIVFVR GETGELRVGI RRARHQQGNI PSSIVSIDCM 240
RHGVIASAKH ALDNQCIFIV VYKPSIRSSQ FIVSYDKFLD AMNNKFIVGS RFTMRFEGDD 300
FSERRYFGTI IGVNDFSPHW KCSEWRSLEV QWDEFASFSR PNKVSPWEIE HLMSALNVPR 360
SSLLKNKRLR EVNEFGQEIG QLSVASPMNT SLRYRDTTED AMNPSRLLMS YPVQPMPKLN 420
YNNQMVTQIE ENITTKAVTN FRLFGVSLAI PLVIKDPIEE IGSDISKLTE GKKFGQSQTL 480
RSPIEIQSKQ FGSTRTCTKV QMQGVTIGRA VDLSVLNGYD QLILELEKLF DLKGQLQTRN 540
QWKIAFTDSD GYEMLVGDDP WPEFCKMVKK ILIYSKEEVK NLKSSKSLSS
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AY669795 | 0.0 | AY669795.1 Arabidopsis thaliana clone C00610 ARF20 (At1g35240) mRNA, complete cds. |
| Publications
? help Back to Top |
- Riechmann JL, et al.
Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
Science, 2000. 290(5499): p. 2105-10
[PMID:11118137] - Hagen G,Guilfoyle T
Auxin-responsive gene expression: genes, promoters and regulatory factors.
Plant Mol. Biol., 2002 Jun-Jul. 49(3-4): p. 373-85
[PMID:12036261] - Cluis CP,Mouchel CF,Hardtke CS
The Arabidopsis transcription factor HY5 integrates light and hormone signaling pathways.
Plant J., 2004. 38(2): p. 332-47
[PMID:15078335] - Remington DL,Vision TJ,Guilfoyle TJ,Reed JW
Contrasting modes of diversification in the Aux/IAA and ARF gene families.
Plant Physiol., 2004. 135(3): p. 1738-52
[PMID:15247399] - Okushima Y, et al.
Functional genomic analysis of the AUXIN RESPONSE FACTOR gene family members in Arabidopsis thaliana: unique and overlapping functions of ARF7 and ARF19.
Plant Cell, 2005. 17(2): p. 444-63
[PMID:15659631] - Hoen DR, et al.
Transposon-mediated expansion and diversification of a family of ULP-like genes.
Mol. Biol. Evol., 2006. 23(6): p. 1254-68
[PMID:16581939] - Axtell MJ,Snyder JA,Bartel DP
Common functions for diverse small RNAs of land plants.
Plant Cell, 2007. 19(6): p. 1750-69
[PMID:17601824] - Swaminathan K,Peterson K,Jack T
The plant B3 superfamily.
Trends Plant Sci., 2008. 13(12): p. 647-55
[PMID:18986826] - Ikeda M,Ohme-Takagi M
A novel group of transcriptional repressors in Arabidopsis.
Plant Cell Physiol., 2009. 50(5): p. 970-5
[PMID:19324928] - Varaud E, et al.
AUXIN RESPONSE FACTOR8 regulates Arabidopsis petal growth by interacting with the bHLH transcription factor BIGPETALp.
Plant Cell, 2011. 23(3): p. 973-83
[PMID:21421811] - Vernoux T, et al.
The auxin signalling network translates dynamic input into robust patterning at the shoot apex.
Mol. Syst. Biol., 2011. 7: p. 508
[PMID:21734647] - Wang J,Yan DW,Yuan TT,Gao X,Lu YT
A gain-of-function mutation in IAA8 alters Arabidopsis floral organ development by change of jasmonic acid level.
Plant Mol. Biol., 2013. 82(1-2): p. 71-83
[PMID:23483289] - Piya S,Shrestha SK,Binder B,Stewart CN,Hewezi T
Protein-protein interaction and gene co-expression maps of ARFs and Aux/IAAs in Arabidopsis.
Front Plant Sci, 2014. 5: p. 744
[PMID:25566309]
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