PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT1G35240.1 | ||||||||
Common Name | ARF20, T9I1.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | ARF | ||||||||
Protein Properties | Length: 590aa MW: 66969.6 Da PI: 7.7075 | ||||||||
Description | auxin response factor 20 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 72.6 | 4.9e-23 | 126 | 223 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f kvlt sd+++ g + +pkk+a e+ ++ ++l +d++g++W+++++yr++++r+ lt+GW+eF +++L gD++vF + +++el+v AT1G35240.1 126 FTKVLTASDTSAYGGFFVPKKHAIEClpplPLP---AQELLAKDLHGNQWRFRHSYRGTPQRHSLTTGWNEFTTSKKLVKGDVIVFV--RGETGELRV 218 89************************9965444...348************************************************..449999*** PP EEE-S CS B3 95 kvfrk 99 +++r+ AT1G35240.1 219 GIRRA 223 ***97 PP | |||||||
2 | Auxin_resp | 103.2 | 3.3e-34 | 248 | 329 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a ha++++++F vvY+P+ +s+F+v+++k+++a+++k++vG+Rf m+fe++d+serr+ Gt++gv+d++p +W+ S+WrsL+ AT1G35240.1 248 AKHALDNQCIFIVVYKPSIRSSQFIVSYDKFLDAMNNKFIVGSRFTMRFEGDDFSERRYFGTIIGVNDFSP-HWKCSEWRSLE 329 689********************************************************************.*********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.6E-35 | 116 | 234 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.32E-28 | 123 | 243 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.91E-22 | 125 | 222 | No hit | No description |
PROSITE profile | PS50863 | 13.521 | 126 | 224 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.8E-21 | 126 | 223 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.9E-22 | 126 | 224 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 6.5E-29 | 248 | 328 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 2.6E-6 | 493 | 531 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 1.08E-9 | 494 | 571 | No hit | No description |
PROSITE profile | PS51745 | 24.637 | 495 | 576 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 590 aa Download sequence Send to blast |
METGNVVNAQ PELSGIIDGS KSYMYEQLWK LCAGPLCDIP KLGENVYYFP QGNIELVDAS 60 TREELNELQP ICDLPSKLQC RVIAIHLKVE NNSDETYAEI TLMPDTTQVV IPTQSENQFR 120 PLVNSFTKVL TASDTSAYGG FFVPKKHAIE CLPPLPLPAQ ELLAKDLHGN QWRFRHSYRG 180 TPQRHSLTTG WNEFTTSKKL VKGDVIVFVR GETGELRVGI RRARHQQGNI PSSIVSIDCM 240 RHGVIASAKH ALDNQCIFIV VYKPSIRSSQ FIVSYDKFLD AMNNKFIVGS RFTMRFEGDD 300 FSERRYFGTI IGVNDFSPHW KCSEWRSLEV QWDEFASFSR PNKVSPWEIE HLMSALNVPR 360 SSLLKNKRLR EVNEFGQEIG QLSVASPMNT SLRYRDTTED AMNPSRLLMS YPVQPMPKLN 420 YNNQMVTQIE ENITTKAVTN FRLFGVSLAI PLVIKDPIEE IGSDISKLTE GKKFGQSQTL 480 RSPIEIQSKQ FGSTRTCTKV QMQGVTIGRA VDLSVLNGYD QLILELEKLF DLKGQLQTRN 540 QWKIAFTDSD GYEMLVGDDP WPEFCKMVKK ILIYSKEEVK NLKSSKSLSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-114 | 1 | 354 | 1 | 357 | Auxin response factor 1 |
4ldw_A | 1e-114 | 1 | 354 | 1 | 357 | Auxin response factor 1 |
4ldw_B | 1e-114 | 1 | 354 | 1 | 357 | Auxin response factor 1 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 79357148 | 0.0 | ||||
Genevisible | 261163_x_at | 0.0 | ||||
Expression Atlas | AT1G35240 | - | ||||
AtGenExpress | AT1G35240 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT1G35240.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Interaction ? help Back to Top | ||||||
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Source | Intact With | |||||
IntAct | Search Q9C7I9 |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT1G35240 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY669795 | 0.0 | AY669795.1 Arabidopsis thaliana clone C00610 ARF20 (At1g35240) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001319148.1 | 0.0 | auxin response factor 20 | ||||
Swissprot | Q9C7I9 | 0.0 | ARFT_ARATH; Auxin response factor 20 | ||||
TrEMBL | A0A2H1ZEC0 | 0.0 | A0A2H1ZEC0_ARATH; Auxin response factor | ||||
STRING | AT1G35240.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12276 | 7 | 31 | Representative plant | OGRP526 | 15 | 78 |
Link Out ? help Back to Top | |
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Phytozome | AT1G35240.1 |
Entrez Gene | 840413 |
iHOP | AT1G35240 |
wikigenes | AT1G35240 |