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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
AT1G34650.1 |
Common Name | F12K21.1, F21H2.11, HDG10, HDGL2-10 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family |
HD-ZIP |
Protein Properties |
Length: 708aa MW: 80058.3 Da PI: 8.0653 |
Description |
homeodomain GLABROUS 10 |
Gene Model |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 59.9 | 4e-19 | 19 | 72 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
+R+ ++++q+++Le++F+++++p+ ++r++L ++l+L+ +q+k+WFqNrR++ +
AT1G34650.1 19 NRRHHSNHQVQRLEAFFHECPHPDDSQRRQLGNELNLKHKQIKFWFQNRRTQAR 72
7999**********************************************9877 PP
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2 | START | 104.5 | 1.8e-33 | 228 | 453 | 2 | 206 |
HHHHHHHHHHHHHHHC-TT-EEEE.......EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEE CS
START 2 laeeaaqelvkkalaeepgWvkss.......esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetle 83
+a a +e++++++ e+ +W ks + n++ + +k + k+ ++ e + +++vv m++ +lv +l++ +W + ++ +a+t+
AT1G34650.1 228 IAKNAVAEVMSLIQMEHSMWIKSTidgraiiDPGNYKRYFTKNSHLKSrsalqSHHESSMEVVVVQMDARNLVDMFLNTE-KWARLFPtivtEAKTIH 324
6788999********************99886666666666665555588998999************************.99999999999****** PP
EECTT.....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SS CS
START 84 vissg.....galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgr 175
v++s ++ + + +l lsplv R+f ++R+++q++++ w+i+dvS ++ +s ++++pSg li+ ++ g+skvtw+ehv++ ++
AT1G34650.1 325 VLDSMdhprqTFSRVVYEQLHILSPLVLpREFIILRTCQQMKEDLWLIADVSCYLQNVEF-ESTAPICTKRPSGVLIQALPHGRSKVTWIEHVEVTDK 421
****99****6666677777777799866***********************76655544.66666789**************************999 PP
XX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
START 176 lp.hwllrslvksglaegaktwvatlqrqcek 206
+ h+l+r l+ g ga++w+atlqr ce+
AT1G34650.1 422 VWpHQLYRDLLYGGFGYGARRWTATLQRMCER 453
855***************************97 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
Protein Sequence Length: 708 aa
Download sequence Send
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MDSSHNDSSS DEEGIDSNNR RHHSNHQVQR LEAFFHECPH PDDSQRRQLG NELNLKHKQI 60 KFWFQNRRTQ ARIHNEKADN IALRVENMKI RCVNEAMEKA LETVLCPPCG GPHGKEEQLC 120 NLQKLRTKNV ILKTEYERLS SYLTKHGGYS IPSVDALPDL HGPSTYGSTS NNRPASYGSS 180 SNHLPQQSSL LRRPFTRELI NTTPLPKPVL LQHFQQLSQL EKNRMFEIAK NAVAEVMSLI 240 QMEHSMWIKS TIDGRAIIDP GNYKRYFTKN SHLKSRSALQ SHHESSMEVV VVQMDARNLV 300 DMFLNTEKWA RLFPTIVTEA KTIHVLDSMD HPRQTFSRVV YEQLHILSPL VLPREFIILR 360 TCQQMKEDLW LIADVSCYLQ NVEFESTAPI CTKRPSGVLI QALPHGRSKV TWIEHVEVTD 420 KVWPHQLYRD LLYGGFGYGA RRWTATLQRM CERLSLYSMT DFPPTDYPGV VKTIEGRRSV 480 MSLGERMLKN FAWIMKMSDK LDLPQQSGAN NSGVRISVRT NTEAGQPPGL IVCAGSSLSL 540 PLPPLQVYDF LRNLEVRHQW DVHCQGNPVT EAARFVTGPD QKNNVTFLQP SSVGEYKLMI 600 LQDGFIDALG GMVVYAPMNL NTAYSAISGQ VDPSTIPILP SGFIISRDSH PSSSEVDGGS 660 MTLLTLAFQI FVTGPSYYTD LNLKDSATTV NTLVSSAVQR IKAMLNCE
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in exclusively in anthers with highest levels in the tapetum and pollen grains. {ECO:0000269|PubMed:16778018}. |
Functional Description ? help
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Source |
Description |
TAIR | Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family. |
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
GenBank | F21H2 | 0.0 | AC007894.2 Arabidopsis thaliana chromosome 1 BAC F21H2 sequence, complete sequence. |
Publications
? help Back to Top |
- Tavares R,Aubourg S,Lecharny A,Kreis M
Organization and structural evolution of four multigene families in Arabidopsis thaliana: AtLCAD, AtLGT, AtMYST and AtHD-GL2. Plant Mol. Biol., 2000. 42(5): p. 703-17 [PMID:10809443] - Riechmann JL, et al.
Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Science, 2000. 290(5499): p. 2105-10 [PMID:11118137] - Schrick K,Nguyen D,Karlowski WM,Mayer KF
START lipid/sterol-binding domains are amplified in plants and are predominantly associated with homeodomain transcription factors. Genome Biol., 2004. 5(6): p. R41 [PMID:15186492] - Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] - Nakamura M, et al.
Characterization of the class IV homeodomain-Leucine Zipper gene family in Arabidopsis. Plant Physiol., 2006. 141(4): p. 1363-75 [PMID:16778018] - Lung SC, et al.
Arabidopsis ACYL-COA-BINDING PROTEIN1 interacts with STEROL C4-METHYL OXIDASE1-2 to modulate gene expression of homeodomain-leucine zipper IV transcription factors. New Phytol., 2018. 218(1): p. 183-200 [PMID:29288621]
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