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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
AT1G34170.1 |
| Common Name | ARF13, F12G12.1, F23M19.15 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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| Family |
ARF |
| Protein Properties |
Length: 505aa MW: 57347.7 Da PI: 8.2014 |
| Description |
AUXIN RESPONSE FACTOR 13 |
| Gene Model |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | B3 | 65.7 | 6.7e-21 | 124 | 227 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-..TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvlt..kGWkeFvkangLkegDfvvFkldgrsefe 91
f k+lt sdv+ sg l++pk++a e+ ++++ +++ l+ +d+ g++W++k+ +r++++r+++t +GW+ F+ ++L +gD++v+ + +++e
AT1G34170.1 124 FSKILTASDVSLSGGLIIPKQYAIECfppldMSQPISTQNLVAKDLYGQEWSFKHVFRGTPQRHMFTsgGGWSVFATTKRLIVGDIFVLL--RGENGE 219
889***************************9777888999***********************99997789*******************..449999 PP
.EEEEE-S CS
B3 92 lvvkvfrk 99
l+++++r+
AT1G34170.1 220 LRFGIRRA 227
*****997 PP
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| 2 | Auxin_resp | 100.2 | 2.8e-33 | 252 | 331 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83
+++a++tk++F+vvY+P+ +s+Fv++++k+++a++++++vG+Rf+m+fe++d+se+r+ Gt++gv+d++p +W++S+WrsLk
AT1G34170.1 252 VVNAFKTKCMFNVVYKPS--SSQFVISYDKFVDAMNNNYIVGSRFRMQFEGKDFSEKRYDGTIIGVNDMSP-HWKDSEWRSLK 331
6899*************8..59*************************************************.*********96 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009734 | Biological Process | auxin-activated signaling pathway |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0005515 | Molecular Function | protein binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 505 aa
Download sequence Send
to blast |
MENNGEMNAQ PELSVDITKT YMYEKLWNIC AGPLCVLPKP GEKVYYFPQG HIELIENSTR 60
DELDHIRPIF DLPSKLRCRV VAIDRKVDKN TDEVYAQISL MPDTTEVMTH NTTMDTRRPI 120
VYFFSKILTA SDVSLSGGLI IPKQYAIECF PPLDMSQPIS TQNLVAKDLY GQEWSFKHVF 180
RGTPQRHMFT SGGGWSVFAT TKRLIVGDIF VLLRGENGEL RFGIRRAKHQ QGHIPSSVIS 240
ANCMQHGVIA SVVNAFKTKC MFNVVYKPSS SQFVISYDKF VDAMNNNYIV GSRFRMQFEG 300
KDFSEKRYDG TIIGVNDMSP HWKDSEWRSL KVQWDELSPF LRPNQVSPWD IEHLIPSSDI 360
SQSSLKKKKH WLQLNEIGAT LSNLWTCQEI GQRSMNSPIS VPEFSYPNAI EDSKFLSGLL 420
LNHSLLAIPN ENYNSDQMIQ PRKEDITTEA TTSCLLFGVD LTKVSKSKDS ICPIESCKKS 480
EISKLKNQKA TTSCLKIKSL TKPNL
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| Functional Description ? help
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| Source |
Description |
| UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AY669793 | 0.0 | AY669793.1 Arabidopsis thaliana clone C105348 (B) ARF13 (At1g34170) mRNA, complete cds. |
| Publications
? help Back to Top |
- Riechmann JL, et al.
Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
Science, 2000. 290(5499): p. 2105-10
[PMID:11118137] - Hagen G,Guilfoyle T
Auxin-responsive gene expression: genes, promoters and regulatory factors.
Plant Mol. Biol., 2002 Jun-Jul. 49(3-4): p. 373-85
[PMID:12036261] - Remington DL,Vision TJ,Guilfoyle TJ,Reed JW
Contrasting modes of diversification in the Aux/IAA and ARF gene families.
Plant Physiol., 2004. 135(3): p. 1738-52
[PMID:15247399] - Okushima Y, et al.
Functional genomic analysis of the AUXIN RESPONSE FACTOR gene family members in Arabidopsis thaliana: unique and overlapping functions of ARF7 and ARF19.
Plant Cell, 2005. 17(2): p. 444-63
[PMID:15659631] - Axtell MJ,Snyder JA,Bartel DP
Common functions for diverse small RNAs of land plants.
Plant Cell, 2007. 19(6): p. 1750-69
[PMID:17601824] - Manzano C,Abraham Z,L
Identification of ubiquitinated proteins in Arabidopsis.
Plant Mol. Biol., 2008. 68(1-2): p. 145-58
[PMID:18535787] - Swaminathan K,Peterson K,Jack T
The plant B3 superfamily.
Trends Plant Sci., 2008. 13(12): p. 647-55
[PMID:18986826] - Vernoux T, et al.
The auxin signalling network translates dynamic input into robust patterning at the shoot apex.
Mol. Syst. Biol., 2011. 7: p. 508
[PMID:21734647]
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