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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
AT1G32330.1 |
Common Name | ATHSFA1D, F27G20.6, F5D14.8, HSF01, HSF8, HSFA1D |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family |
HSF |
Protein Properties |
Length: 485aa MW: 54524.4 Da PI: 4.6383 |
Description |
heat shock transcription factor A1D |
Gene Model |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HSF_DNA-bind | 113.5 | 1.4e-35 | 38 | 129 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98
Fl+k+y++++d+++++++sws+n+nsf+v+++ efa+++Lpk Fkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F +g+k+ll++i
AT1G32330.1 38 FLSKTYDMVDDHNTDSIVSWSANNNSFIVWKPPEFARDLLPKNFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKHLLQSIT 125
9****************************************************************999.........******************** PP
XXXX CS
HSF_DNA-bind 99 rkks 102
r+k
AT1G32330.1 126 RRKP 129
*986 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0009408 | Biological Process | response to heat |
GO:0005634 | Cellular Component | nucleus |
GO:0005737 | Cellular Component | cytoplasm |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0005515 | Molecular Function | protein binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 485 aa
Download sequence Send
to blast |
MDVSKVTTSD GGGDSMETKP SPQPQPAAIL SSNAPPPFLS KTYDMVDDHN TDSIVSWSAN 60 NNSFIVWKPP EFARDLLPKN FKHNNFSSFV RQLNTYGFRK VDPDRWEFAN EGFLRGQKHL 120 LQSITRRKPA HGQGQGHQRS QHSNGQNSSV SACVEVGKFG LEEEVERLKR DKNVLMQELV 180 RLRQQQQSTD NQLQTMVQRL QGMENRQQQL MSFLAKAVQS PHFLSQFLQQ QNQQNESNRR 240 ISDTSKKRRF KRDGIVRNND SATPDGQIVK YQPPMHEQAK AMFKQLMKME PYKTGDDGFL 300 LGNGTSTTEG TEMETSSNQV SGITLKEMPT ASEIQSSSPI ETTPENVSAA SEATENCIPS 360 PDDLTLPDFT HMLPENNSEK PPESFMEPNL GGSSPLLDPD LLIDDSLSFD IDDFPMDSDI 420 DPVDYGLLER LLMSSPVPDN MDSTPVDNET EQEQNGWDKT KHMDNLTQQM GLLSPETLDL 480 SRQNP
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Functional Description ? help
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Source |
Description |
TAIR | Member of Heat Stress Transcription Factor (Hsf) family. Negatively regulated by HSP90.2. |
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Function -- GeneRIF ? help
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- These findings indicated that HsfA1d and HsfA1e not only regulate HsfA2 expression but also function as key regulators of the Hsf signaling network in response to environmental stress.
[PMID: 21471117]
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC084110 | 0.0 | AC084110.4 Arabidopsis thaliana chromosome 1 BAC F27G20 genomic sequence, complete sequence. |
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
GenBank | F5D14 | 0.0 | AC007767.3 Sequence of BAC F5D14 from Arabidopsis thaliana chromosome 1, complete sequence. |
Publications
? help Back to Top |
- Riechmann JL, et al.
Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Science, 2000. 290(5499): p. 2105-10 [PMID:11118137] - Nover L, et al.
Arabidopsis and the heat stress transcription factor world: how many heat stress transcription factors do we need? Cell Stress Chaperones, 2001. 6(3): p. 177-89 [PMID:11599559] - Seki M, et al.
Functional annotation of a full-length Arabidopsis cDNA collection. Science, 2002. 296(5565): p. 141-5 [PMID:11910074] - Zhu H, et al.
Syntenic relationships between Medicago truncatula and Arabidopsis reveal extensive divergence of genome organization. Plant Physiol., 2003. 131(3): p. 1018-26 [PMID:12644654] - Yamada K, et al.
Cytosolic HSP90 regulates the heat shock response that is responsible for heat acclimation in Arabidopsis thaliana. J. Biol. Chem., 2007. 282(52): p. 37794-804 [PMID:17965410] - Guo J, et al.
Genome-wide analysis of heat shock transcription factor families in rice and Arabidopsis. J Genet Genomics, 2008. 35(2): p. 105-18 [PMID:18407058] - Wang Y, et al.
Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis. Plant Physiol., 2008. 148(3): p. 1201-11 [PMID:18775970] - Yamada K,Nishimura M
Cytosolic heat shock protein 90 regulates heat shock transcription factor in Arabidopsis thaliana. Plant Signal Behav, 2008. 3(9): p. 660-2 [PMID:19704818] - Xu X, et al.
Functional characterization of AtHsp90.3 in Saccharomyces cerevisiae and Arabidopsis thaliana under heat stress. Biotechnol. Lett., 2010. 32(7): p. 979-87 [PMID:20229063] - Liu HC,Liao HT,Charng YY
The role of class A1 heat shock factors (HSFA1s) in response to heat and other stresses in Arabidopsis. Plant Cell Environ., 2011. 34(5): p. 738-51 [PMID:21241330] - Nishizawa-Yokoi A, et al.
HsfA1d and HsfA1e involved in the transcriptional regulation of HsfA2 function as key regulators for the Hsf signaling network in response to environmental stress. Plant Cell Physiol., 2011. 52(5): p. 933-45 [PMID:21471117] - Yoshida T, et al.
Arabidopsis HsfA1 transcription factors function as the main positive regulators in heat shock-responsive gene expression. Mol. Genet. Genomics, 2011. 286(5-6): p. 321-32 [PMID:21931939] - Liu HC,Charng YY
Acquired thermotolerance independent of heat shock factor A1 (HsfA1), the master regulator of the heat stress response. Plant Signal Behav, 2012. 7(5): p. 547-50 [PMID:22516818] - Higashi Y, et al.
HsfA1d, a protein identified via FOX hunting using Thellungiella salsuginea cDNAs improves heat tolerance by regulating heat-stress-responsive gene expression. Mol Plant, 2013. 6(2): p. 411-22 [PMID:23393165] - Liu J, et al.
An autoregulatory loop controlling Arabidopsis HsfA2 expression: role of heat shock-induced alternative splicing. Plant Physiol., 2013. 162(1): p. 512-21 [PMID:23503691] - Jung HS, et al.
Subset of heat-shock transcription factors required for the early response of Arabidopsis to excess light. Proc. Natl. Acad. Sci. U.S.A., 2013. 110(35): p. 14474-9 [PMID:23918368] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] - Jin J, et al.
An Arabidopsis Transcriptional Regulatory Map Reveals Distinct Functional and Evolutionary Features of Novel Transcription Factors. Mol. Biol. Evol., 2015. 32(7): p. 1767-73 [PMID:25750178] - Ohama N, et al.
The Transcriptional Cascade in the Heat Stress Response of Arabidopsis Is Strictly Regulated at the Level of Transcription Factor Expression. Plant Cell, 2016. 28(1): p. 181-201 [PMID:26715648]
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