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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
AT1G31640.1 |
| Common Name | AGL92, F27M3.16 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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| Family |
M-type_MADS |
| Protein Properties |
Length: 464aa MW: 52211.5 Da PI: 6.1891 |
| Description |
AGAMOUS-like 92 |
| Gene Model |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 37.7 | 2.7e-12 | 13 | 50 | 6 | 43 |
HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
SRF-TF 6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
r tf kR +gi KK +EL +LCd++++ +i+s+
AT1G31640.1 13 RHFRRATFRKRNAGIRKKLHELTTLCDIKACAVIYSPF 50
566899******************************85 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 464 aa
Download sequence Send
to blast |
MRTKTKLVLI PDRHFRRATF RKRNAGIRKK LHELTTLCDI KACAVIYSPF ENPTVWPSTE 60
GVQEVISEFM EKPATERSKT MMSHETFLRD QITKEQNKLE SLRRENRETQ LKHFMFDCVG 120
GKMSEQQYGA RDLQDLSLFT DQYLNQLNAR KKFLTEYGES SSSVPPLFDV AGANPPVVAD 180
QAAVTVPPLF AVAGANLPVV ADQAAVTVPP LFAVAGANLP VVADQAAVNV PTGFHNMNVN 240
QNQYEPVQPY VPTGFSDHIQ YQNMNFNQNQ QEPVHYQALA VAGAGLPMTQ NQYEPVHYQS 300
LAVAGGGLPM SQLQYEPVQP YIPTVFSDNV QYQHMNLYQN QQEPVHYQAL GVAGAGLPMN 360
QNQYEPVQPY VPTGFSDHFQ FENMNLNQNQ QEPVQYQAPV DFNHQIQQGN YDMNLNQNMK 420
HAHIPFMDGN YYNYHQPPTV GLTSTGHMPS TTTTTTNNNN NNNV
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| Functional Description ? help
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| Source |
Description |
| UniProt | Putative transcription factor. |
| Function -- GeneRIF ? help
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- Studies indicate that AGL36 and AGL92 showed imprinted gene expression.
[PMID: 24039992]
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| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC074360 | 0.0 | AC074360.5 Arabidopsis thaliana chromosome 1 BAC F27M3 genomic sequence, complete sequence. |
| GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
| Publications
? help Back to Top |
- Riechmann JL, et al.
Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
Science, 2000. 290(5499): p. 2105-10
[PMID:11118137] - De Bodt S, et al.
Genomewide structural annotation and evolutionary analysis of the type I MADS-box genes in plants.
J. Mol. Evol., 2003. 56(5): p. 573-86
[PMID:12698294] - Parenicová L, et al.
Molecular and phylogenetic analyses of the complete MADS-box transcription factor family in Arabidopsis: new openings to the MADS world.
Plant Cell, 2003. 15(7): p. 1538-51
[PMID:12837945] - Kofuji R, et al.
Evolution and divergence of the MADS-box gene family based on genome-wide expression analyses.
Mol. Biol. Evol., 2003. 20(12): p. 1963-77
[PMID:12949148] - de Folter S, et al.
Comprehensive interaction map of the Arabidopsis MADS Box transcription factors.
Plant Cell, 2005. 17(5): p. 1424-33
[PMID:15805477] - Zhao J, et al.
Analysis of gene expression profiles in response to Sclerotinia sclerotiorum in Brassica napus.
Planta, 2007. 227(1): p. 13-24
[PMID:17665211] - Hsieh TF, et al.
Regulation of imprinted gene expression in Arabidopsis endosperm.
Proc. Natl. Acad. Sci. U.S.A., 2011. 108(5): p. 1755-62
[PMID:21257907] - Efroni I, et al.
Regulation of leaf maturation by chromatin-mediated modulation of cytokinin responses.
Dev. Cell, 2013. 24(4): p. 438-45
[PMID:23449474] - Yoshida T,Kawabe A
Importance of gene duplication in the evolution of genomic imprinting revealed by molecular evolutionary analysis of the type I MADS-box gene family in Arabidopsis species.
PLoS ONE, 2013. 8(9): p. e73588
[PMID:24039992] - Zhang S, et al.
FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
Plant Physiol., 2018. 177(1): p. 285-299
[PMID:29523711]
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