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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
AT1G31140.2 |
| Common Name | AGL63, alg63, F28K20.7, (goa), GOA |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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| Family |
MIKC_MADS |
| Protein Properties |
Length: 215aa MW: 25174.8 Da PI: 9.8774 |
| Description |
GORDITA |
| Gene Model |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 74.9 | 6.2e-24 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
k+ie+k++rqvtf+kR++ ++KKA+ELSvLCd+ +iifs++++ly+++s
AT1G31140.2 9 KKIEEKIKRQVTFAKRKKSLIKKAYELSVLCDVHLGLIIFSHSNRLYDFCS 59
68***********************************************96 PP
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| 2 | K-box | 30.6 | 1.4e-11 | 89 | 157 | 13 | 81 |
K-box 13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelq 81
+ + + + + + +eienL+ ++ + G +L+ L++ eL + e +Le+sl++ R++K+e++++q +++
AT1G31140.2 89 QCSDCVKTKESMMREIENLKLNLQLYDGHGLNLLTYDELLSFELHLESSLQHARARKSEFMHQQQQQQT 157
45555566788999***********************************************99876543 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0030308 | Biological Process | negative regulation of cell growth |
| GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase |
| GO:0048530 | Biological Process | fruit morphogenesis |
| GO:0080060 | Biological Process | integument development |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0005515 | Molecular Function | protein binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 215 aa
Download sequence Send
to blast |
MRKGKRVIKK IEEKIKRQVT FAKRKKSLIK KAYELSVLCD VHLGLIIFSH SNRLYDFCSN 60
STSMENLIMR YQKEKEGQTT AEHSFHSDQC SDCVKTKESM MREIENLKLN LQLYDGHGLN 120
LLTYDELLSF ELHLESSLQH ARARKSEFMH QQQQQQTDQK LKGKEKGQGS SWEQLMWQAE 180
RQMMTCQRQK DPAPANEGGV PFLRWGTTHR RSSPP
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in bud pedicels, petals, anthers, style, ovary, seeds and embryos. {ECO:0000269|PubMed:20088901, ECO:0000269|PubMed:20598091}. |
| Functional Description ? help
Back to Top |
| Source |
Description |
| TAIR | Encodes a B-sister MADS-box protein, GORDITA which is specific to the Brassicaceae. GOA is the most closely related paralog of ABS. GOA represses fruit growth and contributes to integument development. Over-expression of GOA results in disorganized floral structure and addition of carpel-like features to sepals. |
| UniProt | Probable transcription factor involved in the regulation of fruit growth. Contributes to integument development. Controls organ size via cell expansion (PubMed:20088901). Involved in the regulation of longitudinal growth of the fruit evenly throughout the radial axis (PubMed:20598091). Functions redundantly with TT16/AGL32 to repress nucellus growth and promote its degeneration (PubMed:27233529). {ECO:0000269|PubMed:20088901, ECO:0000269|PubMed:20598091, ECO:0000269|PubMed:27233529}. |
| Function -- GeneRIF ? help
Back to Top |
- GOA has a role in integument development and regulating fruit growth.
[PMID: 20088901] - The knockdown phenotype of GOA suggests a role for this gene in fruit longitudinal growth, while over-expression of GOA results in disorganized floral structure and addition of carpel-like features to sepals
[PMID: 20598091]
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| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | FR671367 | 0.0 | FR671367.1 Arabidopsis thaliana mRNA for putative MADS domain protein AGL63 (GOA), ecotype Col-0. |
| Publications
? help Back to Top |
- Riechmann JL, et al.
Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
Science, 2000. 290(5499): p. 2105-10
[PMID:11118137] - De Bodt S, et al.
Genomewide structural annotation and evolutionary analysis of the type I MADS-box genes in plants.
J. Mol. Evol., 2003. 56(5): p. 573-86
[PMID:12698294] - Parenicová L, et al.
Molecular and phylogenetic analyses of the complete MADS-box transcription factor family in Arabidopsis: new openings to the MADS world.
Plant Cell, 2003. 15(7): p. 1538-51
[PMID:12837945] - Kofuji R, et al.
Evolution and divergence of the MADS-box gene family based on genome-wide expression analyses.
Mol. Biol. Evol., 2003. 20(12): p. 1963-77
[PMID:12949148] - De Bodt S,Raes J,Van de Peer Y,Theissen G
And then there were many: MADS goes genomic.
Trends Plant Sci., 2003. 8(10): p. 475-83
[PMID:14557044] - de Folter S, et al.
Comprehensive interaction map of the Arabidopsis MADS Box transcription factors.
Plant Cell, 2005. 17(5): p. 1424-33
[PMID:15805477] - Prasad K,Zhang X,Tob
The Arabidopsis B-sister MADS-box protein, GORDITA, represses fruit growth and contributes to integument development.
Plant J., 2010. 62(2): p. 203-14
[PMID:20088901] - Prasad K,Ambrose BA
Shaping up the fruit: control of fruit size by an Arabidopsis B-sister MADS-box gene.
Plant Signal Behav, 2010. 5(7): p. 899-902
[PMID:20484990] - Erdmann R,Gramzow L,Melzer R,Theissen G,Becker A
GORDITA (AGL63) is a young paralog of the Arabidopsis thaliana B(sister) MADS box gene ABS (TT16) that has undergone neofunctionalization.
Plant J., 2010. 63(6): p. 914-24
[PMID:20598091] - Xu W, et al.
Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds.
Plant Cell, 2016. 28(6): p. 1343-60
[PMID:27233529]
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