PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT1G29560.1
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C3H
Protein Properties Length: 572aa    MW: 68851.9 Da    PI: 6.995
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT1G29560.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.58.5e-07254273525
                  --SGGGGTS--TTTTT-SS-S CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                  +Cr+f+r G+Ck+G+ C F H
  AT1G29560.1 254 ICRYFLR-GYCKFGSVCGFQH 273
                  7******.************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501037.357227241IPR000571Zinc finger, CCCH-type
SMARTSM003563.4E-5249275IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.042249276IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-5250273IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.0E-5253274IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000293anatomyguard cell
Sequence ? help Back to Top
Protein Sequence    Length: 572 aa     Download sequence    Send to blast
MADAGDNQRR SDEKESISTE ETKENEDLGS GRNDTGHHVY NEGHEEVLEY LKQERLKDAD  60
MQRKRHETES KSIEGTTPDI RLSDSGKGSD EIQKADSVYK RSNADTRVSL PQQRRLKDVV  120
EAHRVRRETE SRLWHQERDR SLVWGGSEPR MRFDESTQGW RDSDYESKWR FHERTPDWDW  180
RDSESRMRSH ERTQDRRGSE SQGVFDERTE RRQEPVRWPG EECWCLRCRN GGSCRYNHPT  240
QLPQELPVRN RLQICRYFLR GYCKFGSVCG FQHIRDRDVA EPMYENWSFD VRTQRRYEIE  300
YSGFRPEKRA KTSLDSVEPD SRKRLEGLEN KREQENPQEP ERQRTEAQDN LQEFREQENP  360
QNQIQINTER QRTMAHDNLQ IVSDSRMHDP RRHDTELRLE REKMVNRELE KQRIEHLIDP  420
LVRRYMQAKR DKEVEQRERA SIESQRIVAQ EILRQQRLQG MRENQNVDSR MHDPRRHDTE  480
LRLEREKMVN RELEKQRIEP LIGPLVRRYM QAKRDKEVEQ RERASIESQR IVAQENLRQQ  540
RLQGMRENQN VDAHDQEKTQ ELGFKGKEGD GV
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1864790260.0
Expression AtlasAT1G29560-
AtGenExpressAT1G29560-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT1G29560.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT1G29560
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0686671e-178AC068667.6 Arabidopsis thaliana chromosome 1 BAC F15D2 genomic sequence, complete sequence.
GenBankCP0026841e-178CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_174249.20.0Zinc finger C-x8-C-x5-C-x3-H type family protein
TrEMBLB3H4U90.0B3H4U9_ARATH; Zinc finger C-x8-C-x5-C-x3-H type family protein
STRINGAT1G29560.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2100922
Publications ? help Back to Top
  1. Deleu W, et al.
    Structure of two melon regions reveals high microsynteny with sequenced plant species.
    Mol. Genet. Genomics, 2007. 278(6): p. 611-22
    [PMID:17665215]