PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

M-type_MADS

Protein Properties

Length: 182aa MW: 20636.7 Da PI: 10.043

Description

AGAMOUS-like 59

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AT1G28460.1	genome	TAIR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	55.4	7.6e-18	15	64	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 k+ie + r+vtfskR+ngi K +ELS+LC++eva i +s +gk y++ AT1G28460.1 15 KKIEKDEGRSVTFSKRLNGIYTKISELSILCGVEVAFIGYSCSGKPYTFG 64 6899********************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	21.474	7	67	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.5E-19	7	66	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	3.66E-23	7	77	IPR002100	Transcription factor, MADS-box
CDD	cd00265	1.92E-32	8	78	No hit	No description
PRINTS	PR00404	5.2E-15	9	29	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	5.1E-20	16	63	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.2E-15	29	44	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.2E-15	44	65	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0009009	anatomy	plant embryo
PO:0009089	anatomy	endosperm
PO:0020093	anatomy	antipodal cell
PO:0001185	developmental stage	plant embryo globular stage
PO:0004507	developmental stage	plant embryo bilateral stage

Sequence ? help Back to Top
Protein Sequence Length: 182 aa Download sequence Send to blast
MNPKKTKGKQ KINIKKIEKD EGRSVTFSKR LNGIYTKISE LSILCGVEVA FIGYSCSGKP 60 YTFGSPSFQA VAERFLNGDA SSSSSSSLVM NAHKQAKIQE LCKKYNRLVE ELKVDEVKVK 120 KAAALAETRV VNKDVWWKVD PNDVKDHEKA KKMMEKYQEL YDKLCEQAAS RIKRGHDENN 180 NK

Expression -- Microarray ? help Back to Top
Source	ID	E-value
Genevisible	261497_x_at	0.0
Expression Atlas	AT1G28460	-
AtGenExpress	AT1G28460	-
ATTED-II	AT1G28460	-

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AT1G28460.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Phenotype -- Mutation ? help Back to Top
Source	ID
T-DNA Express	AT1G28460

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC010155	0.0	AC010155.3 Genomic sequence for Arabidopsis thaliana BAC F3M18 from chromosome I, complete sequence.
GenBank	CP002684	0.0	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_174168.1	1e-133	AGAMOUS-like 59
TrEMBL	Q9SGP4	1e-131	Q9SGP4_ARATH; AGAMOUS-like 59
STRING	AT1G28460.1	1e-132	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4676	13	52
Representative plant	OGRP16	17	761

Link Out ? help Back to Top
Phytozome	AT1G28460.1
Entrez Gene	839745
iHOP	AT1G28460
wikigenes	AT1G28460

Publications ? help Back to Top
Riechmann JL, et al. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Science, 2000. 290(5499): p. 2105-10 [PMID:11118137] De Bodt S, et al. Genomewide structural annotation and evolutionary analysis of the type I MADS-box genes in plants. J. Mol. Evol., 2003. 56(5): p. 573-86 [PMID:12698294] Parenicová L, et al. Molecular and phylogenetic analyses of the complete MADS-box transcription factor family in Arabidopsis: new openings to the MADS world. Plant Cell, 2003. 15(7): p. 1538-51 [PMID:12837945] Kofuji R, et al. Evolution and divergence of the MADS-box gene family based on genome-wide expression analyses. Mol. Biol. Evol., 2003. 20(12): p. 1963-77 [PMID:12949148] de Folter S, et al. Comprehensive interaction map of the Arabidopsis MADS Box transcription factors. Plant Cell, 2005. 17(5): p. 1424-33 [PMID:15805477] Bemer M,Heijmans K,Airoldi C,Davies B,Angenent GC An atlas of type I MADS box gene expression during female gametophyte and seed development in Arabidopsis. Plant Physiol., 2010. 154(1): p. 287-300 [PMID:20631316]