PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT1G28310.2
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family Dof
Protein Properties Length: 325aa    MW: 35444.3 Da    PI: 9.411
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT1G28310.2genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof121.53e-383797262
       zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                 ++ +lkcprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGg+ rknk+++
  AT1G28310.2 37 PQPQLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGSYRKNKRVK 97
                 67899*****************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027013.5E-334095IPR003851Zinc finger, Dof-type
ProDomPD0074785.0E-274195IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.9014195IPR003851Zinc finger, Dof-type
PROSITE patternPS0136104379IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000293anatomyguard cell
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MPIISSPNTN PLASMQSKNM IVASSHQQQQ QQQPQQPQPQ LKCPRCDSSN TKFCYYNNYS  60
LSQPRHFCKA CKRYWTRGGT LRNVPVGGSY RKNKRVKRPS TATTTTASTV STTNSSSPNN  120
PHQISHFSSM NHHPLFYGLS DHMSSCNNNL PMIPSRFSDS SKTCSSSGLE SEFLSSGFSS  180
LSALGLGLPH QMSHDHTING SFINNSTTNK PFLLSGLFGS SMSSSSTLLQ HPHKPMNNGG  240
DMLGQSHLQT LASLQDLHVG GNNEDMKYKE GKLDQISGNI NGFMSSSSSL DPSNYNNMWN  300
NASVVNGAWL DPTNNNVGSS LTSLI
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasAT1G28310
AtGenExpressAT1G28310
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT1G28310.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT1G28310
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY2992720.0AY299272.1 Arabidopsis thaliana clone D2 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001031100.20.0Dof-type zinc finger DNA-binding family protein
SwissprotQ9FZA40.0DOF14_ARATH; Dof zinc finger protein DOF1.4
TrEMBLA0A178W1000.0A0A178W100_ARATH; Uncharacterized protein
TrEMBLQ2V4K70.0Q2V4K7_ARATH; Dof-type zinc finger DNA-binding family protein
STRINGAT1G28310.20.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47092650
Representative plantOGRP3817445
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Yanagisawa S
    The Dof family of plant transcription factors.
    Trends Plant Sci., 2002. 7(12): p. 555-60
    [PMID:12475498]
  3. Lijavetzky D,Carbonero P,Vicente-Carbajosa J
    Genome-wide comparative phylogenetic analysis of the rice and Arabidopsis Dof gene families.
    BMC Evol. Biol., 2003. 3: p. 17
    [PMID:12877745]
  4. Ayele M, et al.
    Whole genome shotgun sequencing of Brassica oleracea and its application to gene discovery and annotation in Arabidopsis.
    Genome Res., 2005. 15(4): p. 487-95
    [PMID:15805490]