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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
AT1G27660.1 |
| Common Name | BHLH110, EN59, T22C5.11 |
| Organism |
|
| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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| Family |
bHLH |
| Protein Properties |
Length: 453aa MW: 49556.9 Da PI: 6.6004 |
| Description |
bHLH family protein |
| Gene Model |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 14.1 | 8.5e-05 | 334 | 372 | 12 | 55 |
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
R +++ ++++ L++l+ + +K + a++L +A+ YIk Lq
AT1G27660.1 334 RKEKLGDRIAALQQLVSPF-----GKTDTASVLMEAIGYIKFLQ 372
7788899*********998.....8******************9 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter |
| GO:0005634 | Cellular Component | nucleus |
| GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding |
| GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 453 aa
Download sequence Send
to blast |
MDSANLHQLQ DQLQLVGSSS SSSSLDNNSD PSCYGASSAH QWSPGGISLN SVSLSHNYNN 60
EMLNTRAHNN NNNNNTSECM SLSSIHNHSL IQQQDFPLQW PHDQSSYQHH EGLLKIKEEL 120
SSSTISDHQE GISKFTDMLN SPVITNYLKI NEHKDYTEKL LLKSMSSGFP INGDYGSSLP 180
SSSSSSSPSS QSHRGNFSQI YPSVNISSLS ESRKMSMDDM SNISRPFDIN MQVFDGRLFE 240
GNVLVPPFNA QEISSLGMSR GSLPSFGLPF HHHLQQTLPH LSSSPTHQME MFSNEPQTSE 300
GKRHNFLMAT KAGENASKKP RVESRSSCPP FKVRKEKLGD RIAALQQLVS PFGKTDTASV 360
LMEAIGYIKF LQSQIETLSV PYMRASRNRP GKASQLVSQS QEGDEEETRD LRSRGLCLVP 420
LSCMTYVTGD GGDGGGGVGT GFWPTPPGFG GGT
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| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC012375 | 0.0 | AC012375.3 Genomic sequence for Arabidopsis thaliana BAC T22C5 from chromosome I, complete sequence. |
| GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
| Publications
? help Back to Top |
- Heim MA, et al.
The basic helix-loop-helix transcription factor family in plants: a genome-wide study of protein structure and functional diversity.
Mol. Biol. Evol., 2003. 20(5): p. 735-47
[PMID:12679534] - Toledo-Ortiz G,Huq E,Quail PH
The Arabidopsis basic/helix-loop-helix transcription factor family.
Plant Cell, 2003. 15(8): p. 1749-70
[PMID:12897250] - Dal Bosco C, et al.
Inactivation of the chloroplast ATP synthase gamma subunit results in high non-photochemical fluorescence quenching and altered nuclear gene expression in Arabidopsis thaliana.
J. Biol. Chem., 2004. 279(2): p. 1060-9
[PMID:14576160] - Bailey PC, et al.
Update on the basic helix-loop-helix transcription factor gene family in Arabidopsis thaliana.
Plant Cell, 2003. 15(11): p. 2497-502
[PMID:14600211] - Castelli V, et al.
Whole genome sequence comparisons and "full-length" cDNA sequences: a combined approach to evaluate and improve Arabidopsis genome annotation.
Genome Res., 2004. 14(3): p. 406-13
[PMID:14993207] - Ehlting J, et al.
Global transcript profiling of primary stems from Arabidopsis thaliana identifies candidate genes for missing links in lignin biosynthesis and transcriptional regulators of fiber differentiation.
Plant J., 2005. 42(5): p. 618-40
[PMID:15918878] - Rehrauer H, et al.
AGRONOMICS1: a new resource for Arabidopsis transcriptome profiling.
Plant Physiol., 2010. 152(2): p. 487-99
[PMID:20032078] - Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
Differentiation, 2010. 80(1): p. 1-8
[PMID:20219281]
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