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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
AT1G26790.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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| Family |
Dof |
| Protein Properties |
Length: 396aa MW: 44742.8 Da PI: 7.2811 |
| Description |
Dof family protein |
| Gene Model |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-Dof | 117.5 | 5.1e-37 | 131 | 190 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
++k+l+cprC+s++tkfCyynny+++qPr+fC++C+ryWt+GG++r vPvG+grrknk +
AT1G26790.1 131 PDKILPCPRCNSADTKFCYYNNYNVNQPRHFCRKCQRYWTAGGSMRIVPVGSGRRKNKGW 190
7899*****************************************************976 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046872 | Molecular Function | metal ion binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 396 aa
Download sequence Send
to blast |
MWLSHLFMSL SKLTCNFSIF SVFMACGSIG MSQVRDTPVK LFGWTITPVS HDPYSSSSHV 60
LPDSSSSSSS SSLSLRPHMM NNQSVTDNTS LKLSSNLNNE SKETSENSDD QHSEITTITS 120
EEEKTTELKK PDKILPCPRC NSADTKFCYY NNYNVNQPRH FCRKCQRYWT AGGSMRIVPV 180
GSGRRKNKGW VSSDQYLHIT SEDTDNYNSS STKILSFESS DSLVTERPKH QSNEVKINAE 240
PVSQEPNNFQ GLLPPQASPV SPPWPYQYPP NPSFYHMPVY WGCAIPVWST LDTSTCLGKR 300
TRDETSHETV KESKNAFERT SLLLESQSIK NETSMATNNH VWYPVPMTRE KTQEFSFFSN 360
GAETKSSNNR FVPETYLNLQ ANPAAMARSM NFRESI
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC006535 | 0.0 | AC006535.7 Genomic sequence for Arabidopsis thaliana BAC T24P13 from chromosome I, complete sequence. |
| GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
| Publications
? help Back to Top |
- Riechmann JL, et al.
Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
Science, 2000. 290(5499): p. 2105-10
[PMID:11118137] - Yanagisawa S
The Dof family of plant transcription factors.
Trends Plant Sci., 2002. 7(12): p. 555-60
[PMID:12475498] - Lijavetzky D,Carbonero P,Vicente-Carbajosa J
Genome-wide comparative phylogenetic analysis of the rice and Arabidopsis Dof gene families.
BMC Evol. Biol., 2003. 3: p. 17
[PMID:12877745] - Wagner R,Pfannschmidt T
Eukaryotic transcription factors in plastids--Bioinformatic assessment and implications for the evolution of gene expression machineries in plants.
Gene, 2006. 381: p. 62-70
[PMID:16934950] - Yang X,Tuskan GA,Cheng MZ
Divergence of the Dof gene families in poplar, Arabidopsis, and rice suggests multiple modes of gene evolution after duplication.
Plant Physiol., 2006. 142(3): p. 820-30
[PMID:16980566] - Chawade A,Br
Putative cold acclimation pathways in Arabidopsis thaliana identified by a combined analysis of mRNA co-expression patterns, promoter motifs and transcription factors.
BMC Genomics, 2007. 8: p. 304
[PMID:17764576] - Hanada K, et al.
Functional compensation of primary and secondary metabolites by duplicate genes in Arabidopsis thaliana.
Mol. Biol. Evol., 2011. 28(1): p. 377-82
[PMID:20736450]
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