PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT1G21200.1 | ||||||||
Common Name | F16F4.11 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | Trihelix | ||||||||
Protein Properties | Length: 443aa MW: 50933.3 Da PI: 6.287 | ||||||||
Description | sequence-specific DNA binding transcription factors | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 85.6 | 6e-27 | 118 | 212 | 1 | 85 |
trihelix 1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdql 85 +Wt+++v++Li+a+++++++++ ++ +kk++W++vsk+m+erg+++sp+qC++k+++lnkrykk++++ +++ +++++++ +++d++ AT1G21200.1 118 KWTDKMVKLLITAVSYIGDDSSIDSssrrkfavlQKKGKWKSVSKVMAERGYHVSPQQCEDKFNDLNKRYKKLNDMLGRGtSCQVVENPALLDSI 212 7**************9999999765567788888**********************************************669999998888765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 1.2E-24 | 116 | 239 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000013 | anatomy | cauline leaf | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0000230 | anatomy | inflorescence meristem | ||||
PO:0000293 | anatomy | guard cell | ||||
PO:0008019 | anatomy | leaf lamina base | ||||
PO:0009005 | anatomy | root | ||||
PO:0009006 | anatomy | shoot system | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009010 | anatomy | seed | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009029 | anatomy | stamen | ||||
PO:0009030 | anatomy | carpel | ||||
PO:0009031 | anatomy | sepal | ||||
PO:0009032 | anatomy | petal | ||||
PO:0009046 | anatomy | flower | ||||
PO:0009047 | anatomy | stem | ||||
PO:0009052 | anatomy | flower pedicel | ||||
PO:0020030 | anatomy | cotyledon | ||||
PO:0020100 | anatomy | hypocotyl | ||||
PO:0020137 | anatomy | leaf apex | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0025281 | anatomy | pollen | ||||
PO:0001054 | developmental stage | vascular leaf senescent stage | ||||
PO:0001078 | developmental stage | plant embryo cotyledonary stage | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0001185 | developmental stage | plant embryo globular stage | ||||
PO:0004507 | developmental stage | plant embryo bilateral stage | ||||
PO:0007103 | developmental stage | LP.10 ten leaves visible stage | ||||
PO:0007115 | developmental stage | LP.04 four leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage | ||||
PO:0007616 | developmental stage | flowering stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 443 aa Download sequence Send to blast |
MDGNFPQGGV VRSGASSYGG FDLQGSMRVH HQDSMNQQHR HNPNSRPLHE GLPFTMVTGQ 60 TCDHHQNQNM SMSEQQKAER EKNSVSDDDE PSFTEEGGDG VHNEANRSTK GSPWQRVKWT 120 DKMVKLLITA VSYIGDDSSI DSSSRRKFAV LQKKGKWKSV SKVMAERGYH VSPQQCEDKF 180 NDLNKRYKKL NDMLGRGTSC QVVENPALLD SIGYLNDKEK DDVRKIMSSK HLFYEEMCSY 240 HNGNRLHLPH DLALQRSLQL ALRSRDDHDN DDSRKHQMED LDDEDHDGDG DEHDEYEEQH 300 YAYGDCRVNH YGGGGGPLKK IRPSLSHEDG DHPSHVNSLE CNKVSLPQIP FSQADVNQGG 360 AESGRAGSVQ KQWMESRTLQ LEEQKLQIQV ELLELEKQRF RWQRFSKKRD QELERMRMEN 420 ERMKLENDRM GLELKQRELG VEL |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.15543 | 0.0 | seed |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 15027986 | 0.0 | ||||
Genevisible | 259562_at | 0.0 | ||||
Expression Atlas | AT1G21200 | - | ||||
AtGenExpress | AT1G21200 | - | ||||
ATTED-II | AT1G21200 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT1G21200.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT1G21200 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY045850 | 0.0 | AY045850.1 Arabidopsis thaliana unknown protein (At1g21200) mRNA, complete cds. | |||
GenBank | AY091378 | 0.0 | AY091378.1 Arabidopsis thaliana unknown protein (At1g21200) mRNA, complete cds. | |||
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. | |||
GenBank | F16F4 | 0.0 | AC036104.3 Sequence of BAC F16F4 from Arabidopsis thaliana chromosome 1, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001322826.1 | 0.0 | sequence-specific DNA binding transcription factor | ||||
Refseq | NP_564136.1 | 0.0 | sequence-specific DNA binding transcription factor | ||||
TrEMBL | A0A384L780 | 0.0 | A0A384L780_ARATH; Uncharacterized protein | ||||
TrEMBL | Q9LMN5 | 0.0 | Q9LMN5_ARATH; F16F4.11 protein | ||||
STRING | AT1G21200.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5042 | 27 | 52 |
Representative plant | OGRP2796 | 13 | 29 |
Link Out ? help Back to Top | |
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Phytozome | AT1G21200.1 |
Entrez Gene | 838715 |
iHOP | AT1G21200 |
wikigenes | AT1G21200 |
Publications ? help Back to Top | |||
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