PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

Protein Properties

Length: 237aa MW: 27282.6 Da PI: 4.3442

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AT1G20600.1	genome	TAIR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	45.2	1.6e-14	126	215	2	82
EEE-..-HHHHT.T-EE--HHH.HTT.......---..--SEEEEEETTS..-EEEEEE..EEETTEEEE-TTHHHHHHHHT--.TT-EEEE CS B3 2 fkvltpsdvlks.grlvlpkkfaeeh.......ggkkeesktltledesg..rsWevkliyrkksgryvltkGWkeFvkangLk.egDfvvF 82 +k+l++sdv + +rl+l+k+ ++e ++++ ++++++++ ++g +++++k+ ++++++ vlt+GW +Fv + gL + Dfv+ AT1G20600.1 126 KKQLMSSDVDTDqSRLMLSKEQVKEKmlpfleeSEDPVKGVDVSVYGPDGevQQMKFKM--WNGDKTPVLTSGWMQFVADYGLLkTSDFVTD 215 699****99879*******9*9977889********666666666..*******************8659999986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	9.61E-15	125	212	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	3.7E-9	125	230	IPR003340	B3 DNA binding domain
CDD	cd10017	9.08E-16	125	214	No hit	No description
Gene3D	G3DSA:2.40.330.10	3.2E-15	126	229	IPR015300	DNA-binding pseudobarrel domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0016020	Cellular Component	membrane
GO:0003677	Molecular Function	DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0009025	anatomy	vascular leaf

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MANSTGKPTS STQEDEEVTY ILAQLMQDVM DREEDIDDED DIDDEVASLP LLLVSQANQK 60 QSRKREEKTE KNQPKRVKNQ NIMKINIHDF SEETLRLIED WYNAELDPQD IFGDDEVTRR 120 FSRPIKKQLM SSDVDTDQSR LMLSKEQVKE KMLPFLEESE DPVKGVDVSV YGPDGEVQQM 180 KFKMWNGDKT PVLTSGWMQF VADYGLLKTS DFVTDGKVSQ LEHVFIRGSK VRCCNTS

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	18394885	0.0
Genevisible	255416_at	1e-145
Expression Atlas	AT1G20600	-
AtGenExpress	AT1G20600	-

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AT1G20600.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Phenotype -- Mutation ? help Back to Top
Source	ID
T-DNA Express	AT1G20600

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC027665	0.0	AC027665.4 Genomic sequence for Arabidopsis thaliana BAC F5M15 from chromosome I, complete sequence.
GenBank	AC069251	0.0	AC069251.5 Genomic sequence for Arabidopsis thaliana BAC F2D10 from chromosome I, complete sequence.
GenBank	CP002684	0.0	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_173484.1	1e-175	AP2/B3-like transcriptional factor family protein
Swissprot	Q9LM90	1e-176	Y1060_ARATH; B3 domain-containing protein At1g20600
TrEMBL	A0A178WJD0	1e-157	A0A178WJD0_ARATH; Uncharacterized protein
STRING	AT1G20600.1	1e-174	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2103	18	35
Representative plant	OGRP10517	3	4

Link Out ? help Back to Top
Phytozome	AT1G20600.1
Entrez Gene	838649
iHOP	AT1G20600
wikigenes	AT1G20600

Publications ? help Back to Top
Mitra SK,Gantt JA,Ruby JF,Clouse SD,Goshe MB Membrane proteomic analysis of Arabidopsis thaliana using alternative solubilization techniques. J. Proteome Res., 2007. 6(5): p. 1933-50 [PMID:17432890] Swaminathan K,Peterson K,Jack T The plant B3 superfamily. Trends Plant Sci., 2008. 13(12): p. 647-55 [PMID:18986826] Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]