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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
AT1G18790.1 |
Common Name | AtRKD1, F6A14.11, RKD1, URP5 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family |
Nin-like |
Protein Properties |
Length: 269aa MW: 30637.8 Da PI: 9.0184 |
Description |
RWP-RK domain-containing protein |
Gene Model |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | RWP-RK | 83.2 | 2.5e-26 | 125 | 175 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52
+k++s e++s yF++pi++AA+eL+++lT+LK++CR++GIkRWPhRk+ sl
AT1G18790.1 125 SKTLSKETISLYFYMPITQAARELNIGLTLLKKRCRELGIKRWPHRKLMSL 175
5899********************************************997 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0051302 | Biological Process | regulation of cell division |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 269 aa
Download sequence Send
to blast |
MKSFCKLEYD QVFGKENNSF SFLNHSSLYS HQSELANPFF ELEDEMLPSA TSSNCFTSAS 60 SFLALPDLEP ISIVSHEADI LSVYGSASWT AEETMFVSDF AKKSETTTTK KRRCREECFS 120 SCSVSKTLSK ETISLYFYMP ITQAARELNI GLTLLKKRCR ELGIKRWPHR KLMSLQKLIS 180 NVKELEKMEG EENEDKLRNA LEKLEKEKKT IEKLPDLKFE DKTKRLRQAC FKANHKRKRR 240 SGMSTPITSS SSSASASSSS YSSVSGFER
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Functional Description ? help
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Source |
Description |
UniProt | Putative transcription factor. {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC011809 | 1e-179 | AC011809.2 Arabidopsis thaliana chromosome I BAC F6A14 genomic sequence, complete sequence. |
GenBank | CP002684 | 1e-179 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Publications
? help Back to Top |
- Riechmann JL, et al.
Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Science, 2000. 290(5499): p. 2105-10 [PMID:11118137] - Schauser L,Wieloch W,Stougaard J
Evolution of NIN-like proteins in Arabidopsis, rice, and Lotus japonicus. J. Mol. Evol., 2005. 60(2): p. 229-37 [PMID:15785851] - Koszegi D, et al.
Members of the RKD transcription factor family induce an egg cell-like gene expression program. Plant J., 2011. 67(2): p. 280-91 [PMID:21457369] - Waki T, et al.
A GAL4-based targeted activation tagging system in Arabidopsis thaliana. Plant J., 2013. 73(3): p. 357-67 [PMID:23057675]
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