PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT1G17460.1
Common NameTRFL3
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB_related
Protein Properties Length: 604aa    MW: 66954 Da    PI: 5.6169
Description TRF-like 3
Gene Model
Gene Model ID Type Source Coding Sequence
AT1G17460.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding285e-09498545347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      +WT  E e+lv++v ++G g W+ I +      ++Rt  ++k++w+++
      AT1G17460.1 498 AWTISEVEKLVEGVSKYGVGKWTEIKKLSFspyTHRTTVDLKDKWRNL 545
                      7*************************999899**************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.287491550IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.2E-12493548IPR009057Homeodomain-like
SuperFamilySSF466891.79E-15493547IPR009057Homeodomain-like
SMARTSM007171.5E-7495548IPR001005SANT/Myb domain
CDDcd116606.97E-22497547No hitNo description
PfamPF002492.1E-6498545IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0031627Biological Processtelomeric loop formation
GO:0000783Cellular Componentnuclear telomere cap complex
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000013anatomycauline leaf
PO:0000037anatomyshoot apex
PO:0000293anatomyguard cell
PO:0008019anatomyleaf lamina base
PO:0009005anatomyroot
PO:0009006anatomyshoot system
PO:0009009anatomyplant embryo
PO:0009010anatomyseed
PO:0009025anatomyvascular leaf
PO:0009029anatomystamen
PO:0009031anatomysepal
PO:0009032anatomypetal
PO:0009046anatomyflower
PO:0009047anatomystem
PO:0009052anatomyflower pedicel
PO:0020038anatomypetiole
PO:0020100anatomyhypocotyl
PO:0025022anatomycollective leaf structure
PO:0001054developmental stagevascular leaf senescent stage
PO:0001078developmental stageplant embryo cotyledonary stage
PO:0001081developmental stagemature plant embryo stage
PO:0001185developmental stageplant embryo globular stage
PO:0004507developmental stageplant embryo bilateral stage
PO:0007095developmental stageLP.08 eight leaves visible stage
PO:0007098developmental stageLP.02 two leaves visible stage
PO:0007103developmental stageLP.10 ten leaves visible stage
PO:0007115developmental stageLP.04 four leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 604 aa     Download sequence    Send to blast
MFGNVKDYGE TFQDSIFQTR NGSLSSTNQI GNPVTYKLVR VAGDGSLVPA TDEEMLEVKN  60
LLEKNEQDMP VLPDPIQTEE YIPDEGSPSQ FLQLENFEGF FQSETAGPYT ENLNSRHESK  120
EELMNGSQML FVLPDTKFQI STELSGNVEL VPSKVLLQEP ILFSSNGCSI NQSTDVLNAT  180
ASPKEPALST AASKPDFSRV PGEISLANLS IKELQETFRA TFGRETTSKD KRWLKRRIKM  240
GLINSCVVPT TTLTINDSKL IGGDQDAIDA FSKGTVDEET ATESIDTPAS PDGIKGHSND  300
FGHSPVETFV DHYSGNEDFE GEDGSAKRVR KPTRRYIEET NEKQQIDGSM IPSKDPSSIQ  360
AVSSEGRVVV TRMVSLAGSR IQVPYVSHVR RSRPRENIMA LGEFRSKSWE VKAAPEEGNL  420
NLSPPQLSND VNRVPGVKSA SRCVQKESDK DHLKPIFTDV DQEMMEPELL DSSGDSSDDN  480
FVDAPITQSA SGRKLHRAWT ISEVEKLVEG VSKYGVGKWT EIKKLSFSPY THRTTVDLKD  540
KWRNLQKASS SNRMEGGLKK HGSMAIPTHI MLQVRELAQK QSPISRVVSK ARVVKRSRSR  600
NGFL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1594599KRSRSR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.418330.0flower
Expression -- Microarray ? help Back to Top
Source ID E-value
Genevisible261086_at0.0
Expression AtlasAT1G17460-
AtGenExpressAT1G17460-
ATTED-IIAT1G17460-
Functional Description ? help Back to Top
Source Description
TAIRArabidopsis thaliana myb family transcription factor (At1g17460)
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT1G17460.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT1G17460
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0806650.0AY080665.1 Arabidopsis thaliana unknown protein (At1g17460) mRNA, complete cds.
GenBankAY1229660.0AY122966.1 Arabidopsis thaliana unknown protein (At1g17460) mRNA, complete cds.
GenBankAY5195370.0AY519537.1 Arabidopsis thaliana MYB transcription factor (At1g17460) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_564025.20.0TRF-like 3
TrEMBLQ8RXU80.0Q8RXU8_ARATH; MYB transcription factor
STRINGAT1G17460.20.0(Arabidopsis thaliana)
Publications ? help Back to Top
  1. Karamysheva ZN,Surovtseva YV,Vespa L,Shakirov EV,Shippen DE
    A C-terminal Myb extension domain defines a novel family of double-strand telomeric DNA-binding proteins in Arabidopsis.
    J. Biol. Chem., 2004. 279(46): p. 47799-807
    [PMID:15364931]
  2. Chang IF,Szick-Miranda K,Pan S,Bailey-Serres J
    Proteomic characterization of evolutionarily conserved and variable proteins of Arabidopsis cytosolic ribosomes.
    Plant Physiol., 2005. 137(3): p. 848-62
    [PMID:15734919]
  3. Yanhui C, et al.
    The MYB transcription factor superfamily of Arabidopsis: expression analysis and phylogenetic comparison with the rice MYB family.
    Plant Mol. Biol., 2006. 60(1): p. 107-24
    [PMID:16463103]
  4. Culligan KM,Robertson CE,Foreman J,Doerner P,Britt AB
    ATR and ATM play both distinct and additive roles in response to ionizing radiation.
    Plant J., 2006. 48(6): p. 947-61
    [PMID:17227549]
  5. Lee J, et al.
    Analysis of transcription factor HY5 genomic binding sites revealed its hierarchical role in light regulation of development.
    Plant Cell, 2007. 19(3): p. 731-49
    [PMID:17337630]
  6. Ascencio-Ib
    Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection.
    Plant Physiol., 2008. 148(1): p. 436-54
    [PMID:18650403]